Wall clock time and date at job start Mon Mar 30 2020 03:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31224 * 1 3 3 Si 1.86805 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47038 * 240.00132 * 3 2 1 5 5 H 1.48497 * 109.46820 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46959 * 119.99678 * 3 2 1 7 7 C 1.39092 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00088 * 180.02562 * 7 2 1 9 9 N 1.37061 * 119.99682 * 0.02562 * 7 2 1 10 10 N 1.40146 * 126.68813 * 0.02562 * 9 7 2 11 11 N 1.28545 * 109.27358 * 179.76044 * 10 9 7 12 12 C 1.34434 * 110.28742 * 0.39300 * 11 10 9 13 13 C 1.41694 * 126.04208 * 179.87312 * 12 11 10 14 14 O 1.21427 * 119.99960 * 179.40791 * 13 12 11 15 15 C 1.37331 * 126.68586 * 179.97438 * 9 7 2 16 16 C 1.46301 * 127.05408 * 0.03891 * 15 9 7 17 17 C 1.37887 * 126.09335 * 134.98205 * 16 15 9 18 18 C 1.40396 * 106.54058 * 179.97438 * 17 16 15 19 19 C 1.35120 * 107.19092 * 359.97438 * 18 17 16 20 20 O 1.34122 * 109.01328 * 359.75360 * 19 18 17 21 21 H 0.96996 * 119.99396 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.00185 * 359.69226 * 13 12 11 23 23 H 1.08003 * 126.72809 * 359.93706 * 17 16 15 24 24 H 1.08001 * 126.40302 * 180.02562 * 18 17 16 25 25 H 1.08006 * 125.49383 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2463 1.6177 0.0000 4 1 3.1001 1.6963 -1.2125 5 1 1.2814 2.7464 -0.0006 6 1 3.1000 1.6963 1.2125 7 6 2.0077 -1.2046 0.0005 8 1 3.0877 -1.2045 0.0010 9 7 1.3224 -2.3915 0.0005 10 7 -0.0696 -2.5547 -0.0005 11 7 -0.3497 -3.8092 -0.0052 12 6 0.7793 -4.5390 0.0011 13 6 0.8576 -5.9538 0.0010 14 8 1.9411 -6.5019 -0.0038 15 6 1.8659 -3.6527 0.0005 16 6 3.2870 -4.0002 0.0013 17 6 3.8884 -4.9585 0.7896 18 6 5.2526 -4.9504 0.4576 19 6 5.4256 -4.0106 -0.4976 20 8 4.2412 -3.4451 -0.7739 21 1 -0.4849 0.8401 -0.0004 22 1 -0.0464 -6.5446 0.0006 23 1 3.4050 -5.5908 1.5196 24 1 6.0200 -5.5787 0.8852 25 1 6.3654 -3.7586 -0.9665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295586.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:15 Heat of formation + Delta-G solvation = 69.771874 kcal Electronic energy + Delta-G solvation = -15800.409133 eV Core-core repulsion = 12976.200319 eV Total energy + Delta-G solvation = -2824.208814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.75121 -40.28749 -37.74087 -34.62018 -32.37452 -32.10287 -30.46801 -27.97597 -26.26781 -23.56134 -22.05405 -21.24406 -20.56850 -19.10918 -18.20439 -16.79506 -15.82275 -15.29853 -15.27447 -14.64529 -14.41368 -14.25105 -13.50881 -12.98578 -12.42627 -12.25044 -12.08212 -11.97213 -11.82063 -11.57998 -10.85241 -10.44266 -10.32759 -9.85262 -9.36347 -9.17878 -8.91208 -8.28911 -7.28478 -7.22198 -4.99742 1.66517 2.46919 2.68768 2.76517 2.83852 3.02566 3.33660 3.41943 3.64333 4.14463 4.31958 4.50321 5.29428 5.40405 5.57996 5.74371 5.92607 6.20234 6.40628 6.48990 6.51091 6.66960 6.71555 7.13835 7.25800 7.50427 7.76858 8.00417 8.33797 8.61172 9.65805 9.69754 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.025041 B = 0.010962 C = 0.007829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.888105 B = 2553.611789 C = 3575.557788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.042 3.958 3 Si 0.951 3.049 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.270 4.270 8 H 0.132 0.868 9 N -0.121 5.121 10 N -0.083 5.083 11 N -0.256 5.256 12 C -0.152 4.152 13 C 0.424 3.576 14 O -0.492 6.492 15 C -0.006 4.006 16 C 0.088 3.912 17 C -0.163 4.163 18 C -0.211 4.211 19 C -0.065 4.065 20 O -0.171 6.171 21 H 0.293 0.707 22 H 0.090 0.910 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -0.821 0.445 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.409 4.409 8 H 0.149 0.851 9 N 0.115 4.885 10 N -0.061 5.061 11 N -0.120 5.120 12 C -0.298 4.298 13 C 0.285 3.715 14 O -0.366 6.366 15 C -0.142 4.142 16 C 0.036 3.964 17 C -0.184 4.184 18 C -0.230 4.230 19 C -0.134 4.134 20 O -0.066 6.066 21 H 0.105 0.895 22 H 0.106 0.894 23 H 0.163 0.837 24 H 0.160 0.840 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.399 -0.097 0.217 5.404 hybrid contribution 1.326 0.317 0.040 1.364 sum 6.725 0.220 0.257 6.733 Atomic orbital electron populations 1.70096 1.06736 1.30611 1.28059 1.26047 0.96032 1.01521 0.94553 0.85580 0.79326 0.77305 0.80547 1.18160 1.19223 1.18182 1.20569 0.93145 0.80316 1.46919 0.85104 1.46849 1.07113 1.04273 1.30256 1.82482 0.87214 1.07219 1.29183 1.74219 1.24897 1.00363 1.12555 1.20870 0.88263 0.96751 1.23909 1.21294 0.92440 0.87105 0.70616 1.90524 1.32827 1.74512 1.38705 1.18622 0.88637 0.85285 1.21681 1.19285 0.85675 0.97029 0.94431 1.21789 0.92754 1.00995 1.02844 1.21572 0.97021 1.02444 1.01967 1.23890 0.87910 0.99008 1.02571 1.84111 1.16302 1.54107 1.52077 0.89546 0.89396 0.83702 0.84021 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.08 11.86 55.50 0.66 -17.42 15 2 C 0.04 0.97 5.50 -17.49 -0.10 0.88 15 3 Si 0.95 16.83 29.55 -169.99 -5.02 11.80 15 4 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 5 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 6 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 7 C -0.27 -6.75 10.07 -14.90 -0.15 -6.90 15 8 H 0.13 3.05 7.33 -52.49 -0.38 2.67 15 9 N -0.12 -3.26 3.77 -7.80 -0.03 -3.29 15 10 N -0.08 -2.31 11.60 60.35 0.70 -1.61 15 11 N -0.26 -6.65 12.34 32.26 0.40 -6.25 15 12 C -0.15 -3.70 6.94 -84.67 -0.59 -4.29 15 13 C 0.42 8.75 11.54 32.05 0.37 9.12 15 14 O -0.49 -10.80 14.07 5.43 0.08 -10.72 15 15 C -0.01 -0.15 6.93 -81.42 -0.56 -0.71 15 16 C 0.09 2.02 6.23 -36.47 -0.23 1.79 15 17 C -0.16 -3.34 8.85 -38.90 -0.34 -3.69 15 18 C -0.21 -3.60 10.87 -39.88 -0.43 -4.04 15 19 C -0.06 -1.09 12.06 29.62 0.36 -0.73 15 20 O -0.17 -3.64 10.34 4.54 0.05 -3.60 15 21 H 0.29 6.43 8.30 -40.82 -0.34 6.10 15 22 H 0.09 1.48 8.06 -52.49 -0.42 1.05 15 23 H 0.15 2.94 7.24 -52.48 -0.38 2.56 15 24 H 0.14 1.93 8.06 -52.49 -0.42 1.51 15 25 H 0.19 2.28 8.06 -52.48 -0.42 1.86 15 LS Contribution 240.88 15.07 3.63 3.63 Total: -1.00 -30.16 240.88 -2.39 -32.55 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -1.17 Total: 3.48 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.68 Total: -8.56 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 1.73 Total: -28.58 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.12 Total: -14.32 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.02 Total: 11.80 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.16 -2.39 -32.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295586.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.322 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds