Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30453 * 1 3 3 Si 1.86797 * 120.00461 * 2 1 4 4 H 1.48497 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47100 * 300.00290 * 3 2 1 6 6 H 1.48500 * 109.47104 * 59.99726 * 3 2 1 7 7 C 1.40556 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00565 * 163.59170 * 7 2 1 9 9 C 1.40338 * 119.99501 * 343.58675 * 7 2 1 10 10 C 1.39045 * 119.19336 * 155.60693 * 9 7 2 11 11 C 1.41207 * 119.71578 * 180.02562 * 10 9 7 12 12 O 1.22035 * 120.88894 * 180.02562 * 11 10 9 13 13 C 1.47382 * 118.21679 * 359.97438 * 11 10 9 14 14 C 1.39634 * 120.99606 * 180.02562 * 13 11 10 15 15 C 1.36666 * 119.81166 * 179.97438 * 14 13 11 16 16 C 1.38823 * 120.54363 * 0.02562 * 15 14 13 17 17 C 1.37969 * 120.62111 * 359.97438 * 16 15 14 18 18 F 1.35108 * 120.13399 * 180.02562 * 17 16 15 19 19 C 1.39412 * 119.73575 * 359.81618 * 17 16 15 20 20 N 1.37411 * 119.19927 * 335.62566 * 9 7 2 21 21 H 0.97003 * 119.26764 * 359.97438 * 20 9 7 22 22 H 0.97003 * 119.99894 * 0.02562 * 1 2 3 23 23 H 1.08009 * 120.14082 * 0.02562 * 10 9 7 24 24 H 1.08002 * 120.09510 * 0.02562 * 14 13 11 25 25 H 1.08002 * 119.72937 * 180.02562 * 15 14 13 26 26 H 1.07993 * 119.69073 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2386 1.6176 0.0000 4 1 3.6986 1.3462 -0.0006 5 1 1.8799 2.3964 -1.2125 6 1 1.8799 2.3964 1.2125 7 6 2.0073 -1.2173 -0.0005 8 1 3.0543 -1.2363 -0.2647 9 6 1.3484 -2.4079 0.3424 10 6 1.8451 -3.6180 -0.1293 11 6 1.1904 -4.8227 0.2085 12 8 1.6081 -5.8967 -0.1932 13 6 -0.0101 -4.7483 1.0602 14 6 -0.7021 -5.9033 1.4300 15 6 -1.8123 -5.8063 2.2211 16 6 -2.2593 -4.5676 2.6607 17 6 -1.5909 -3.4135 2.3074 18 9 -2.0343 -2.2132 2.7412 19 6 -0.4538 -3.4910 1.5047 20 7 0.2279 -2.3495 1.1356 21 1 -0.0891 -1.4868 1.4459 22 1 -0.4850 0.8401 -0.0004 23 1 2.7278 -3.6364 -0.7513 24 1 -0.3606 -6.8707 1.0925 25 1 -2.3463 -6.7005 2.5067 26 1 -3.1384 -4.5069 3.2850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062568868.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = -65.379296 kcal Electronic energy + Delta-G solvation = -15661.024624 eV Core-core repulsion = 12811.035254 eV Total energy + Delta-G solvation = -2849.989370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.38704 -39.67476 -36.72565 -36.46079 -33.72080 -30.81419 -30.09786 -28.54011 -26.56070 -22.94288 -22.28299 -21.07200 -18.33193 -17.81975 -17.46526 -16.07485 -15.46945 -15.43526 -15.22809 -14.42992 -14.20129 -13.86835 -13.45406 -13.02715 -12.47032 -12.04142 -11.85892 -11.72195 -11.62932 -11.43410 -11.20758 -11.01419 -10.74860 -10.55947 -9.83263 -8.33077 -8.32368 -8.16290 -7.47650 -6.64743 -5.17840 1.40953 1.73322 2.52436 2.78655 2.86496 3.08309 3.51250 3.80035 4.01669 4.38728 4.67607 5.13453 5.23338 5.39022 5.61963 5.66933 6.02826 6.35567 6.47389 6.55700 6.64052 6.81767 6.92237 7.08177 7.28258 7.51738 7.74309 7.86259 8.05016 8.50243 8.61843 9.43787 9.49649 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.009761 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.289723 B = 2867.730330 C = 3764.594623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.073 3.927 3 Si 0.929 3.071 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.456 4.456 8 H 0.111 0.889 9 C 0.353 3.647 10 C -0.457 4.457 11 C 0.404 3.596 12 O -0.577 6.577 13 C -0.178 4.178 14 C -0.043 4.043 15 C -0.164 4.164 16 C -0.106 4.106 17 C 0.020 3.980 18 F -0.144 7.144 19 C 0.187 3.813 20 N -0.602 5.602 21 H 0.420 0.580 22 H 0.298 0.702 23 H 0.120 0.880 24 H 0.133 0.867 25 H 0.126 0.874 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 1.385 4.860 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.148 4.148 3 Si 0.752 3.248 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.129 0.871 9 C 0.246 3.754 10 C -0.481 4.481 11 C 0.304 3.696 12 O -0.471 6.471 13 C -0.184 4.184 14 C -0.062 4.062 15 C -0.184 4.184 16 C -0.126 4.126 17 C -0.003 4.003 18 F -0.123 7.123 19 C 0.078 3.922 20 N -0.216 5.216 21 H 0.263 0.737 22 H 0.110 0.890 23 H 0.138 0.862 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.023 1.071 4.636 6.231 hybrid contribution -0.172 1.532 0.195 1.553 sum -4.195 2.602 4.831 6.907 Atomic orbital electron populations 1.69297 1.08085 1.31673 1.32845 1.26405 0.95042 1.02990 0.90374 0.85876 0.81063 0.78672 0.79215 1.17546 1.19177 1.19068 1.19863 0.99339 0.89408 1.40140 0.87115 1.17714 0.80231 0.94970 0.82499 1.21582 1.12598 0.90667 1.23296 1.18005 0.82617 0.89719 0.79251 1.90546 1.68068 1.32356 1.56163 1.20682 1.02085 0.90643 1.04947 1.20853 0.93053 0.98200 0.94091 1.20435 0.98980 0.96499 1.02507 1.20874 0.99847 0.91158 1.00697 1.17116 0.97051 0.81367 1.04765 1.91433 1.88933 1.43445 1.88471 1.18108 0.91130 0.88608 0.94332 1.42115 1.26407 1.07644 1.45410 0.73735 0.88976 0.86198 0.84890 0.85628 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.55 11.16 55.58 0.62 -16.93 15 2 C 0.07 1.58 5.16 -17.26 -0.09 1.49 15 3 Si 0.93 15.98 29.59 -169.99 -5.03 10.95 15 4 H -0.25 -4.33 7.11 56.52 0.40 -3.93 15 5 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 6 H -0.27 -4.48 7.11 56.52 0.40 -4.08 15 7 C -0.46 -10.73 9.02 -37.92 -0.34 -11.07 15 8 H 0.11 2.48 7.91 -52.49 -0.41 2.07 15 9 C 0.35 8.84 6.34 -84.28 -0.53 8.31 15 10 C -0.46 -11.98 9.72 -38.16 -0.37 -12.35 15 11 C 0.40 10.66 6.94 -34.74 -0.24 10.42 15 12 O -0.58 -16.26 17.29 4.89 0.08 -16.17 15 13 C -0.18 -4.12 5.89 -104.79 -0.62 -4.73 15 14 C -0.04 -0.84 9.59 -39.63 -0.38 -1.22 15 15 C -0.16 -2.63 9.97 -39.93 -0.40 -3.03 15 16 C -0.11 -1.73 10.00 -39.46 -0.39 -2.13 15 17 C 0.02 0.39 7.32 -39.24 -0.29 0.10 15 18 F -0.14 -2.78 16.66 2.25 0.04 -2.74 15 19 C 0.19 4.19 6.67 -83.79 -0.56 3.63 15 20 N -0.60 -14.19 4.91 -8.48 -0.04 -14.24 15 21 H 0.42 9.66 5.76 -40.82 -0.24 9.42 15 22 H 0.30 5.89 8.29 -40.82 -0.34 5.55 15 23 H 0.12 3.11 8.06 -52.48 -0.42 2.69 15 24 H 0.13 2.47 7.75 -52.49 -0.41 2.06 15 25 H 0.13 1.55 8.06 -52.49 -0.42 1.12 15 26 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 241.42 15.07 3.64 3.64 Total: -1.00 -27.71 241.42 -6.36 -34.08 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -1.46 Total: 11.99 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -4.21 Total: -10.58 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.58 Total: -31.17 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.08 Total: -16.17 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: -5.03 Total: 10.95 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.71 -6.36 -34.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062568868.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.303 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds