Wall clock time and date at job start Mon Mar 30 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30451 * 1 3 3 Si 1.86805 * 119.99832 * 2 1 4 4 H 1.48493 * 109.47193 * 240.00118 * 3 2 1 5 5 H 1.48504 * 109.46874 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47567 * 119.99644 * 3 2 1 7 7 C 1.40564 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99730 * 163.58184 * 7 2 1 9 9 C 1.40312 * 119.99833 * 343.59207 * 7 2 1 10 10 C 1.39055 * 119.18742 * 155.59258 * 9 7 2 11 11 C 1.41183 * 119.70297 * 180.02562 * 10 9 7 12 12 O 1.22040 * 120.88315 * 179.97438 * 11 10 9 13 13 C 1.47383 * 118.22636 * 0.02562 * 11 10 9 14 14 C 1.39606 * 120.95293 * 180.02562 * 13 11 10 15 15 C 1.37860 * 119.63902 * 179.97438 * 14 13 11 16 16 F 1.35098 * 119.84139 * 180.02562 * 15 14 13 17 17 C 1.39053 * 120.32024 * 0.02562 * 15 14 13 18 18 C 1.37763 * 120.62641 * 0.23337 * 17 15 14 19 19 C 1.39175 * 119.95836 * 359.49546 * 18 17 15 20 20 N 1.37418 * 119.19023 * 335.61068 * 9 7 2 21 21 H 0.96996 * 119.25600 * 359.96425 * 20 9 7 22 22 H 0.96996 * 120.00434 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.14619 * 0.04407 * 10 9 7 24 24 H 1.08001 * 120.18143 * 0.02562 * 14 13 11 25 25 H 1.08000 * 119.68693 * 179.97438 * 17 15 14 26 26 H 1.08006 * 120.01785 * 179.71596 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2385 1.6178 0.0000 4 1 3.0922 1.6965 -1.2124 5 1 1.2734 2.7465 -0.0006 6 1 3.0922 1.6966 1.2125 7 6 2.0074 -1.2173 0.0005 8 1 3.0544 -1.2363 -0.2638 9 6 1.3488 -2.4075 0.3443 10 6 1.8457 -3.6179 -0.1266 11 6 1.1912 -4.8221 0.2122 12 8 1.6084 -5.8963 -0.1896 13 6 -0.0099 -4.7472 1.0631 14 6 -0.7009 -5.9024 1.4331 15 6 -1.8210 -5.8009 2.2303 16 9 -2.4926 -6.9162 2.5913 17 6 -2.2630 -4.5561 2.6648 18 6 -1.5934 -3.4079 2.3026 19 6 -0.4572 -3.4890 1.5030 20 7 0.2284 -2.3484 1.1378 21 1 -0.0882 -1.4855 1.4474 22 1 -0.4850 0.8400 -0.0004 23 1 2.7284 -3.6367 -0.7484 24 1 -0.3594 -6.8704 1.0973 25 1 -3.1419 -4.4884 3.2887 26 1 -1.9480 -2.4458 2.6419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062568870.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:38 Heat of formation + Delta-G solvation = -82.122474 kcal Electronic energy + Delta-G solvation = -15414.264849 eV Core-core repulsion = 12563.549440 eV Total energy + Delta-G solvation = -2850.715409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.77654 -41.45322 -38.47283 -38.14425 -35.28328 -32.77437 -31.81243 -30.09450 -28.17581 -24.62831 -23.80621 -22.98135 -20.05017 -19.55375 -18.93779 -17.89561 -17.01644 -16.94093 -16.55623 -16.12738 -15.69303 -15.41326 -15.04289 -14.71448 -14.17305 -13.96255 -13.71103 -13.52470 -13.23978 -13.10993 -12.92033 -12.30925 -12.19764 -11.99081 -11.32238 -10.18424 -10.13422 -9.85351 -9.13267 -8.40550 -7.03809 -0.13392 0.09811 0.95833 1.39949 1.53651 1.60983 2.10966 2.15402 2.39262 2.70605 3.27490 3.36535 3.64399 3.77738 4.06408 4.25189 4.44977 4.81259 4.89795 4.96243 5.04440 5.10284 5.16228 5.20990 5.66665 5.83738 5.89506 6.02525 6.29315 6.72606 6.90638 7.49363 7.86426 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.007701 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.941809 B = 3635.135294 C = 4305.034417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.049 3.951 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.253 1.253 7 C -0.471 4.471 8 H 0.108 0.892 9 C 0.344 3.656 10 C -0.498 4.498 11 C 0.379 3.621 12 O -0.626 6.626 13 C -0.204 4.204 14 C -0.085 4.085 15 C 0.032 3.968 16 F -0.144 7.144 17 C -0.078 4.078 18 C -0.146 4.146 19 C 0.189 3.811 20 N -0.599 5.599 21 H 0.424 0.576 22 H 0.315 0.685 23 H 0.099 0.901 24 H 0.125 0.875 25 H 0.182 0.818 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 6.461 6.768 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.172 4.172 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.176 1.176 7 C -0.501 4.501 8 H 0.126 0.874 9 C 0.235 3.765 10 C -0.522 4.522 11 C 0.283 3.717 12 O -0.526 6.526 13 C -0.209 4.209 14 C -0.104 4.104 15 C 0.011 3.989 16 F -0.123 7.123 17 C -0.097 4.097 18 C -0.167 4.167 19 C 0.083 3.917 20 N -0.214 5.214 21 H 0.268 0.732 22 H 0.128 0.872 23 H 0.118 0.882 24 H 0.143 0.857 25 H 0.199 0.801 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.229 6.041 6.566 10.881 hybrid contribution 0.427 0.286 -0.393 0.647 sum -5.802 6.326 6.173 10.573 Atomic orbital electron populations 1.69250 1.09061 1.33804 1.30578 1.27148 0.95783 1.05198 0.89104 0.84888 0.78767 0.73598 0.80593 1.18610 1.18006 1.17644 1.20108 0.99643 0.90280 1.40072 0.87366 1.17761 0.81350 0.94482 0.82942 1.21507 1.13252 0.91984 1.25434 1.18458 0.84101 0.89241 0.79883 1.90481 1.69943 1.33534 1.58621 1.20348 1.01509 0.92748 1.06293 1.20930 0.94148 0.98563 0.96778 1.17446 0.94426 0.83675 1.03304 1.91445 1.79282 1.50965 1.90630 1.21287 1.00729 0.88723 0.98932 1.20839 0.94141 1.00819 1.00917 1.18430 0.92808 0.86126 0.94352 1.42080 1.25873 1.08258 1.45192 0.73224 0.87222 0.88248 0.85662 0.80094 0.81077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -31.07 11.16 21.93 0.24 -30.82 15 2 C 0.05 1.91 5.16 85.47 0.44 2.35 15 3 Si 1.00 28.98 29.59 68.60 2.03 31.01 15 4 H -0.26 -7.80 7.11 99.48 0.71 -7.09 15 5 H -0.26 -6.74 7.11 99.48 0.71 -6.03 15 6 H -0.25 -7.17 7.11 99.48 0.71 -6.47 15 7 C -0.47 -21.42 9.01 23.34 0.21 -21.21 15 8 H 0.11 4.81 7.91 -2.91 -0.02 4.79 15 9 C 0.34 17.04 6.34 38.97 0.25 17.29 15 10 C -0.50 -27.65 9.72 23.19 0.23 -27.42 15 11 C 0.38 21.51 6.94 25.40 0.18 21.69 15 12 O -0.63 -38.92 17.29 -5.45 -0.09 -39.01 15 13 C -0.20 -9.73 5.89 -19.97 -0.12 -9.85 15 14 C -0.08 -3.59 9.61 22.51 0.22 -3.37 15 15 C 0.03 1.10 7.29 22.38 0.16 1.26 15 16 F -0.14 -4.69 17.26 44.97 0.78 -3.91 15 17 C -0.08 -2.13 9.99 22.35 0.22 -1.91 15 18 C -0.15 -4.42 9.88 22.38 0.22 -4.20 15 19 C 0.19 7.80 6.66 38.97 0.26 8.06 15 20 N -0.60 -25.87 4.90 -180.89 -0.89 -26.75 15 21 H 0.42 16.48 6.27 -92.71 -0.58 15.90 15 22 H 0.32 10.46 8.29 -92.71 -0.77 9.69 15 23 H 0.10 5.65 8.06 -2.91 -0.02 5.63 15 24 H 0.13 5.50 7.75 -2.91 -0.02 5.48 15 25 H 0.18 3.29 8.06 -2.91 -0.02 3.26 15 26 H 0.17 3.86 8.06 -2.91 -0.02 3.83 15 Total: -1.00 -62.80 242.42 4.99 -57.81 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.66 Total: 28.99 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 2.27 Total: -17.31 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.64 Total: -57.58 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.09 Total: -39.01 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.78 Total: -3.91 kcal Atomic # 14 Polarization: 28.98 SS G_CDS: 2.03 Total: 31.01 kcal Total: -62.80 4.99 -57.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062568870.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.317 kcal (2) G-P(sol) polarization free energy of solvation -62.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds