Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86803 * 119.99531 * 2 1 4 4 H 1.48503 * 109.47522 * 270.00168 * 3 2 1 5 5 H 1.48502 * 109.47356 * 30.00671 * 3 2 1 6 6 H 1.48501 * 109.46992 * 150.00483 * 3 2 1 7 7 C 1.39704 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.41193 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.38092 * 122.77601 * 180.02562 * 9 7 2 11 11 S 1.70998 * 108.86111 * 179.97438 * 10 9 7 12 12 C 1.75912 * 90.75770 * 359.97438 * 11 10 9 13 13 C 1.47825 * 125.06265 * 179.97438 * 12 11 10 14 14 C 1.39941 * 120.57348 * 0.02562 * 13 12 11 15 15 C 1.38355 * 118.26346 * 179.97438 * 14 13 12 16 16 N 1.32426 * 119.19928 * 359.97438 * 15 14 13 17 17 C 1.31844 * 121.09997 * 0.02562 * 16 15 14 18 18 N 1.31613 * 121.91602 * 0.02562 * 17 16 15 19 19 N 1.29809 * 109.87797 * 0.24118 * 12 11 10 20 20 H 0.96999 * 120.00186 * 359.97438 * 1 2 3 21 21 H 1.08002 * 125.57151 * 359.97438 * 10 9 7 22 22 H 1.07999 * 120.86320 * 0.25153 * 14 13 12 23 23 H 1.08000 * 120.39618 * 180.02562 * 15 14 13 24 24 H 1.08010 * 119.04133 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.4915 2.0467 -1.4001 5 1 1.4415 2.6527 0.7002 6 1 3.5417 1.4403 0.6999 7 6 2.0087 -1.2098 -0.0005 8 1 3.0888 -1.2098 -0.0010 9 6 1.3029 -2.4327 -0.0016 10 6 1.9347 -3.6606 -0.0017 11 16 0.7488 -4.8925 -0.0024 12 6 -0.5346 -3.6893 -0.0018 13 6 -1.9816 -3.9912 -0.0026 14 6 -2.4324 -5.3161 -0.0034 15 6 -3.7970 -5.5438 -0.0036 16 7 -4.6246 -4.5100 -0.0025 17 6 -4.1687 -3.2728 -0.0018 18 7 -2.8799 -3.0062 -0.0026 19 7 -0.0216 -2.4969 -0.0063 20 1 -0.4850 0.8400 0.0004 21 1 3.0033 -3.8173 -0.0013 22 1 -1.7332 -6.1392 0.0006 23 1 -4.1827 -6.5526 -0.0038 24 1 -4.8735 -2.4544 -0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069640033.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 70.551146 kcal Electronic energy + Delta-G solvation = -13133.767798 eV Core-core repulsion = 10752.345647 eV Total energy + Delta-G solvation = -2381.422151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.82481 -39.75192 -35.44867 -34.59398 -33.37698 -30.95832 -27.71373 -26.78223 -25.28389 -23.50125 -21.11346 -19.69226 -18.31123 -17.90108 -17.09221 -16.70762 -16.42359 -15.93279 -15.41415 -14.68678 -14.66946 -14.42012 -13.65066 -13.44153 -12.94562 -12.65168 -12.30933 -11.93332 -11.86574 -11.59328 -11.21633 -10.80059 -10.23513 -10.00941 -9.90007 -9.29573 -8.44266 -6.43012 -0.63985 0.08481 0.70030 0.78026 1.36649 1.41323 1.51644 1.58744 2.22455 2.32920 2.91718 2.99982 3.27666 3.45356 3.45580 3.94399 4.12852 4.44715 4.60690 4.87715 5.04588 5.23195 5.34940 5.44298 6.00977 6.13875 6.48610 6.83065 7.14083 7.61312 8.42810 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.008377 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.319458 B = 3341.505280 C = 4211.982057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.021 3.979 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.089 0.911 9 C 0.185 3.815 10 C -0.466 4.466 11 S 0.106 5.894 12 C 0.037 3.963 13 C 0.232 3.768 14 C -0.207 4.207 15 C 0.163 3.837 16 N -0.532 5.532 17 C 0.289 3.711 18 N -0.524 5.524 19 N -0.398 5.398 20 H 0.279 0.721 21 H 0.153 0.847 22 H 0.172 0.828 23 H 0.222 0.778 24 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -8.129 0.012 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.198 4.198 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.107 0.893 9 C 0.060 3.940 10 C -0.606 4.606 11 S 0.356 5.644 12 C -0.241 4.241 13 C 0.085 3.915 14 C -0.231 4.231 15 C -0.003 4.003 16 N -0.247 5.247 17 C 0.001 3.999 18 N -0.240 5.240 19 N -0.115 5.115 20 H 0.090 0.910 21 H 0.171 0.829 22 H 0.189 0.811 23 H 0.239 0.761 24 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.519 -7.819 0.010 10.180 hybrid contribution 1.739 1.176 -0.008 2.100 sum -4.779 -6.643 0.001 8.183 Atomic orbital electron populations 1.70266 1.08533 1.29351 1.31847 1.26986 0.95854 1.04710 0.92285 0.85064 0.78837 0.75487 0.79412 1.18722 1.19367 1.17816 1.19352 0.94583 0.89389 1.47059 0.89250 1.18416 0.86126 0.94572 0.94847 1.25930 1.03062 0.95094 1.36558 1.81736 0.97146 1.11263 1.74302 1.26120 0.96538 0.92229 1.09231 1.19390 0.89334 0.90738 0.92061 1.23085 1.00015 0.96307 1.03653 1.23893 0.88002 1.00344 0.88037 1.68482 1.40985 1.00628 1.14585 1.25481 0.89526 0.94571 0.90365 1.68568 1.04033 1.37940 1.13431 1.67387 1.12146 1.21132 1.10831 0.91029 0.82933 0.81091 0.76124 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.40 11.69 21.79 0.25 -44.15 14 2 C 0.02 1.15 5.49 85.17 0.47 1.61 14 3 Si 0.99 40.12 29.56 68.60 2.03 42.14 14 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 14 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 14 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 14 7 C -0.47 -26.69 9.23 23.35 0.22 -26.48 14 8 H 0.09 4.76 7.84 -2.91 -0.02 4.74 14 9 C 0.19 10.65 6.46 39.72 0.26 10.90 14 10 C -0.47 -23.30 11.00 67.79 0.75 -22.56 14 11 S 0.11 4.33 22.17 -56.49 -1.25 3.08 14 12 C 0.04 1.77 7.39 87.53 0.65 2.42 14 13 C 0.23 9.46 6.79 41.87 0.28 9.74 14 14 C -0.21 -5.91 9.71 22.71 0.22 -5.69 14 15 C 0.16 3.75 11.30 84.63 0.96 4.71 14 16 N -0.53 -14.81 10.42 -200.26 -2.09 -16.89 14 17 C 0.29 9.33 12.28 180.92 2.22 11.55 14 18 N -0.52 -22.13 10.37 -189.27 -1.96 -24.09 14 19 N -0.40 -22.84 8.39 -182.89 -1.53 -24.38 14 20 H 0.28 14.60 8.30 -92.71 -0.77 13.83 14 21 H 0.15 7.12 8.06 -2.91 -0.02 7.09 14 22 H 0.17 3.91 7.38 -2.91 -0.02 3.89 14 23 H 0.22 2.61 8.06 -2.91 -0.02 2.59 14 24 H 0.22 5.55 8.06 -2.91 -0.02 5.52 14 Total: -1.00 -71.45 241.26 2.70 -68.75 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.24 Total: 9.32 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 6.01 Total: -13.78 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.33 Total: -109.51 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.25 Total: 3.08 kcal Total: -71.45 2.70 -68.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069640033.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.304 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds