Wall clock time and date at job start Mon Mar 30 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30712 * 1 3 3 Si 1.86792 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47471 * 274.98311 * 3 2 1 5 5 H 1.48504 * 109.47141 * 34.98463 * 3 2 1 6 6 H 1.48505 * 109.47301 * 154.98602 * 3 2 1 7 7 C 1.40198 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99875 * 186.51127 * 7 2 1 9 9 C 1.39918 * 120.00050 * 6.51154 * 7 2 1 10 10 N 1.31530 * 125.28799 * 173.68240 * 9 7 2 11 11 C 1.31288 * 115.82547 * 180.16966 * 10 9 7 12 12 C 1.48141 * 122.48109 * 179.80829 * 11 10 9 13 13 C 1.39632 * 120.11953 * 359.73274 * 12 11 10 14 14 N 1.31944 * 119.85221 * 179.72974 * 13 12 11 15 15 C 1.32254 * 120.10475 * 0.51762 * 14 13 12 16 16 C 1.38423 * 120.24353 * 359.45484 * 15 14 13 17 17 N 1.32031 * 120.14561 * 0.29531 * 16 15 14 18 18 C 1.37225 * 115.03657 * 359.53407 * 11 10 9 19 19 S 1.70998 * 109.07882 * 0.25132 * 18 11 10 20 20 H 0.97003 * 119.99471 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.07194 * 359.97438 * 13 12 11 22 22 H 1.08001 * 119.88187 * 179.72784 * 15 14 13 23 23 H 1.07999 * 119.92814 * 180.27914 * 16 15 14 24 24 H 1.08006 * 125.46098 * 180.28889 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 2.3834 2.1071 -1.3947 5 1 1.4953 2.6199 0.8028 6 1 3.5875 1.4119 0.5920 7 6 2.0080 -1.2142 0.0005 8 1 3.0829 -1.2172 0.1066 9 6 1.3151 -2.4220 -0.1363 10 7 1.8716 -3.6066 -0.2673 11 6 1.0428 -4.6179 -0.3861 12 6 1.5097 -6.0147 -0.5457 13 6 2.8768 -6.2968 -0.5802 14 7 3.2868 -7.5434 -0.7172 15 6 2.4055 -8.5228 -0.8320 16 6 1.0493 -8.2479 -0.7979 17 7 0.6281 -7.0046 -0.6562 18 6 -0.2881 -4.2858 -0.3455 19 16 -0.4362 -2.5933 -0.1523 20 1 -0.4849 0.8401 -0.0004 21 1 3.5969 -5.4969 -0.4908 22 1 2.7452 -9.5414 -0.9484 23 1 0.3341 -9.0522 -0.8876 24 1 -1.1102 -4.9820 -0.4225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070024503.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:15 Heat of formation + Delta-G solvation = 64.197483 kcal Electronic energy + Delta-G solvation = -12980.106901 eV Core-core repulsion = 10598.409235 eV Total energy + Delta-G solvation = -2381.697667 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47935 -37.51268 -34.30086 -33.73542 -31.38307 -28.93934 -26.51111 -24.82349 -23.70200 -21.93446 -18.92992 -17.82300 -17.02185 -16.46832 -15.78621 -15.28288 -14.73462 -14.38667 -13.77581 -13.14508 -12.74686 -12.31060 -12.29491 -11.77489 -11.49289 -11.17381 -10.82082 -10.64956 -10.48330 -9.86174 -9.79674 -9.03657 -8.61589 -8.01892 -7.93491 -7.20356 -7.13184 -4.83601 1.04695 1.53033 2.47131 2.89807 2.96571 2.98221 3.34070 3.62412 3.80247 3.83130 4.41043 4.44712 4.66947 4.94392 5.08767 5.24668 5.67560 5.79254 5.99593 6.60560 6.74833 6.84426 6.98576 7.29699 7.72314 7.81294 8.19214 8.25263 8.29915 9.54179 9.72737 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.052948 B = 0.006629 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.693565 B = 4222.608319 C = 4738.038696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.056 3.944 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.374 4.374 8 H 0.106 0.894 9 C 0.205 3.795 10 N -0.589 5.589 11 C 0.121 3.879 12 C 0.179 3.821 13 C 0.071 3.929 14 N -0.444 5.444 15 C 0.015 3.985 16 C 0.049 3.951 17 N -0.441 5.441 18 C -0.399 4.399 19 S 0.133 5.867 20 H 0.300 0.700 21 H 0.178 0.822 22 H 0.161 0.839 23 H 0.163 0.837 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -4.353 -0.645 4.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.417 4.417 8 H 0.124 0.876 9 C -0.050 4.050 10 N -0.311 5.311 11 C -0.018 4.018 12 C 0.038 3.962 13 C -0.091 4.091 14 N -0.158 5.158 15 C -0.144 4.144 16 C -0.112 4.112 17 N -0.157 5.157 18 C -0.546 4.546 19 S 0.394 5.606 20 H 0.113 0.887 21 H 0.195 0.805 22 H 0.178 0.822 23 H 0.180 0.820 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.041 -3.549 -0.544 3.591 hybrid contribution 0.386 -0.478 -0.174 0.639 sum 0.427 -4.027 -0.718 4.113 Atomic orbital electron populations 1.68774 1.07769 1.31030 1.33420 1.26189 0.95110 1.02757 0.92602 0.85673 0.80127 0.78086 0.79488 1.18960 1.19697 1.17939 1.18991 0.96307 0.87334 1.39110 0.87645 1.23764 0.91306 0.93784 0.96116 1.67119 1.34503 0.97432 1.32070 1.18071 0.89041 0.89817 1.04854 1.20367 0.90328 0.92487 0.93020 1.23903 0.95695 0.93973 0.95565 1.68403 1.38362 1.00439 1.08604 1.23593 0.91256 0.99553 1.00005 1.23619 0.95724 0.94576 0.97268 1.68401 1.38246 0.99612 1.09429 1.26655 0.99502 1.04445 1.24005 1.84326 1.11555 0.94568 1.70181 0.88742 0.80495 0.82182 0.81998 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.05 10.68 55.56 0.59 -17.45 14 2 C 0.06 1.26 5.49 -17.29 -0.09 1.17 14 3 Si 0.94 16.84 29.57 -169.99 -5.03 11.81 14 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 14 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 6 H -0.26 -4.53 7.11 56.52 0.40 -4.12 14 7 C -0.37 -9.32 9.44 -38.22 -0.36 -9.68 14 8 H 0.11 2.52 7.86 -52.48 -0.41 2.11 14 9 C 0.20 5.41 7.10 -17.05 -0.12 5.29 14 10 N -0.59 -15.47 10.01 -9.51 -0.10 -15.57 14 11 C 0.12 3.03 6.66 -84.40 -0.56 2.47 14 12 C 0.18 3.93 6.74 -82.77 -0.56 3.37 14 13 C 0.07 1.43 10.81 -16.98 -0.18 1.24 14 14 N -0.44 -7.97 10.49 -12.74 -0.13 -8.10 14 15 C 0.02 0.23 11.22 -17.30 -0.19 0.03 14 16 C 0.05 0.75 11.22 -17.40 -0.20 0.56 14 17 N -0.44 -8.78 9.99 -9.59 -0.10 -8.88 14 18 C -0.40 -9.81 10.65 30.36 0.32 -9.49 14 19 S 0.13 3.29 20.16 -107.50 -2.17 1.12 14 20 H 0.30 6.16 8.29 -40.82 -0.34 5.82 14 21 H 0.18 3.55 7.68 -52.49 -0.40 3.15 14 22 H 0.16 1.66 8.06 -52.49 -0.42 1.23 14 23 H 0.16 1.77 8.06 -52.49 -0.42 1.35 14 24 H 0.14 3.30 7.98 -52.48 -0.42 2.88 14 LS Contribution 239.47 15.07 3.61 3.61 Total: -1.00 -28.20 239.47 -6.48 -34.67 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -1.21 Total: 3.83 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.95 Total: -5.05 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.27 Total: -50.00 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.17 Total: 1.12 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.20 -6.48 -34.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070024503.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.872 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds