Wall clock time and date at job start Mon Mar 30 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30712 * 1 3 3 Si 1.86792 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47471 * 274.98311 * 3 2 1 5 5 H 1.48504 * 109.47141 * 34.98463 * 3 2 1 6 6 H 1.48505 * 109.47301 * 154.98602 * 3 2 1 7 7 C 1.40198 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99875 * 186.51127 * 7 2 1 9 9 C 1.39918 * 120.00050 * 6.51154 * 7 2 1 10 10 N 1.31530 * 125.28799 * 173.68240 * 9 7 2 11 11 C 1.31288 * 115.82547 * 180.16966 * 10 9 7 12 12 C 1.48141 * 122.48109 * 179.80829 * 11 10 9 13 13 C 1.39632 * 120.11953 * 359.73274 * 12 11 10 14 14 N 1.31944 * 119.85221 * 179.72974 * 13 12 11 15 15 C 1.32254 * 120.10475 * 0.51762 * 14 13 12 16 16 C 1.38423 * 120.24353 * 359.45484 * 15 14 13 17 17 N 1.32031 * 120.14561 * 0.29531 * 16 15 14 18 18 C 1.37225 * 115.03657 * 359.53407 * 11 10 9 19 19 S 1.70998 * 109.07882 * 0.25132 * 18 11 10 20 20 H 0.97003 * 119.99471 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.07194 * 359.97438 * 13 12 11 22 22 H 1.08001 * 119.88187 * 179.72784 * 15 14 13 23 23 H 1.07999 * 119.92814 * 180.27914 * 16 15 14 24 24 H 1.08006 * 125.46098 * 180.28889 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 2.3834 2.1071 -1.3947 5 1 1.4953 2.6199 0.8028 6 1 3.5875 1.4119 0.5920 7 6 2.0080 -1.2142 0.0005 8 1 3.0829 -1.2172 0.1066 9 6 1.3151 -2.4220 -0.1363 10 7 1.8716 -3.6066 -0.2673 11 6 1.0428 -4.6179 -0.3861 12 6 1.5097 -6.0147 -0.5457 13 6 2.8768 -6.2968 -0.5802 14 7 3.2868 -7.5434 -0.7172 15 6 2.4055 -8.5228 -0.8320 16 6 1.0493 -8.2479 -0.7979 17 7 0.6281 -7.0046 -0.6562 18 6 -0.2881 -4.2858 -0.3455 19 16 -0.4362 -2.5933 -0.1523 20 1 -0.4849 0.8401 -0.0004 21 1 3.5969 -5.4969 -0.4908 22 1 2.7452 -9.5414 -0.9484 23 1 0.3341 -9.0522 -0.8876 24 1 -1.1102 -4.9820 -0.4225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070024503.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:15 Heat of formation + Delta-G solvation = 44.694678 kcal Electronic energy + Delta-G solvation = -12980.952606 eV Core-core repulsion = 10598.409235 eV Total energy + Delta-G solvation = -2382.543372 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.90827 -39.34920 -36.07752 -35.20798 -32.89636 -30.69539 -28.36539 -26.36336 -25.13119 -23.68177 -20.64250 -19.73287 -18.52455 -17.84793 -17.41927 -16.92646 -16.34196 -15.87801 -15.32984 -14.63915 -14.57734 -14.16364 -13.73641 -13.45125 -13.00649 -12.62440 -12.41117 -12.26825 -11.99525 -11.68495 -11.44124 -10.54590 -10.09084 -9.93104 -9.83945 -9.01144 -8.91108 -6.74475 -0.41577 0.12802 0.69404 1.41880 1.42989 1.52266 1.60870 1.90130 2.17766 2.18365 2.83074 3.00335 3.23883 3.34100 3.59247 3.95677 4.26598 4.44671 4.67725 4.78206 4.96468 5.14374 5.40995 5.52248 5.91608 6.24962 6.37941 6.43536 6.83968 7.64262 8.00275 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.052948 B = 0.006629 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.693565 B = 4222.608319 C = 4738.038696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.021 3.979 3 Si 1.020 2.980 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.253 1.253 7 C -0.395 4.395 8 H 0.107 0.893 9 C 0.172 3.828 10 N -0.613 5.613 11 C 0.117 3.883 12 C 0.139 3.861 13 C 0.061 3.939 14 N -0.455 5.455 15 C 0.043 3.957 16 C 0.058 3.942 17 N -0.461 5.461 18 C -0.424 4.424 19 S 0.119 5.881 20 H 0.313 0.687 21 H 0.164 0.836 22 H 0.218 0.782 23 H 0.215 0.785 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -5.326 -0.881 5.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.199 4.199 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.177 1.177 7 C -0.438 4.438 8 H 0.125 0.875 9 C -0.081 4.081 10 N -0.336 5.336 11 C -0.022 4.022 12 C 0.001 3.999 13 C -0.098 4.098 14 N -0.169 5.169 15 C -0.118 4.118 16 C -0.105 4.105 17 N -0.177 5.177 18 C -0.571 4.571 19 S 0.380 5.620 20 H 0.127 0.873 21 H 0.181 0.819 22 H 0.234 0.766 23 H 0.231 0.769 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.543 -4.492 -0.772 4.590 hybrid contribution 0.234 -0.409 -0.125 0.487 sum 0.777 -4.900 -0.897 5.042 Atomic orbital electron populations 1.68793 1.09140 1.32904 1.31736 1.27227 0.95907 1.05631 0.91168 0.84577 0.78692 0.73106 0.79837 1.18281 1.18131 1.17662 1.19385 0.96711 0.88117 1.39566 0.87523 1.24246 0.92273 0.94590 0.96970 1.67175 1.35199 0.97854 1.33403 1.18558 0.89147 0.91280 1.03243 1.20117 0.91324 0.91775 0.96732 1.23616 0.94687 0.94933 0.96582 1.68481 1.39268 1.00014 1.09141 1.24581 0.90751 1.00964 0.95492 1.24548 0.97388 0.93847 0.94691 1.68347 1.38665 1.01017 1.09685 1.26635 0.99743 1.04213 1.26503 1.84023 1.10997 0.95393 1.71629 0.87301 0.81908 0.76566 0.76866 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.91 10.68 21.87 0.23 -36.68 14 2 C 0.02 0.95 5.49 85.34 0.47 1.42 14 3 Si 1.02 33.45 29.57 68.60 2.03 35.48 14 4 H -0.26 -8.22 7.11 99.48 0.71 -7.51 14 5 H -0.26 -7.81 7.11 99.48 0.71 -7.11 14 6 H -0.25 -8.16 7.11 99.48 0.71 -7.45 14 7 C -0.39 -20.19 9.44 23.15 0.22 -19.97 14 8 H 0.11 5.25 7.86 -2.91 -0.02 5.23 14 9 C 0.17 9.49 7.10 85.15 0.60 10.09 14 10 N -0.61 -33.86 10.01 -184.00 -1.84 -35.70 14 11 C 0.12 6.10 6.66 41.62 0.28 6.38 14 12 C 0.14 6.22 6.74 41.93 0.28 6.51 14 13 C 0.06 2.49 10.81 85.01 0.92 3.41 14 14 N -0.45 -15.42 10.49 -194.22 -2.04 -17.46 14 15 C 0.04 1.09 11.22 84.67 0.95 2.04 14 16 C 0.06 1.55 11.22 84.71 0.95 2.50 14 17 N -0.46 -17.89 9.99 -184.27 -1.84 -19.73 14 18 C -0.42 -21.86 10.65 67.58 0.72 -21.14 14 19 S 0.12 6.17 20.16 -56.49 -1.14 5.04 14 20 H 0.31 12.65 8.29 -92.71 -0.77 11.88 14 21 H 0.16 6.90 7.68 -2.91 -0.02 6.88 14 22 H 0.22 2.97 8.06 -2.91 -0.02 2.94 14 23 H 0.21 3.40 8.06 -2.91 -0.02 3.38 14 24 H 0.15 7.13 7.98 -2.91 -0.02 7.11 14 Total: -1.00 -64.49 239.47 2.03 -62.46 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.24 Total: 15.36 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.39 Total: -8.77 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -5.49 Total: -109.57 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.14 Total: 5.04 kcal Total: -64.49 2.03 -62.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070024503.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.152 kcal (2) G-P(sol) polarization free energy of solvation -64.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds