Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47164 * 270.00386 * 3 2 1 5 5 H 1.48510 * 109.46957 * 29.99804 * 3 2 1 6 6 H 1.48491 * 109.47393 * 150.00048 * 3 2 1 7 7 C 1.38951 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99591 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00083 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00116 * 180.02562 * 10 9 7 13 13 H 1.08999 * 110.04994 * 301.40162 * 12 10 9 14 14 C 1.53881 * 110.02552 * 179.97438 * 12 10 9 15 15 C 1.54164 * 108.70281 * 193.52717 * 14 12 10 16 16 S 1.82915 * 105.17474 * 27.85699 * 15 14 12 17 17 O 1.42106 * 109.35539 * 111.32536 * 16 15 14 18 18 O 1.42103 * 109.35557 * 244.52673 * 16 15 14 19 19 C 1.55049 * 110.02890 * 62.80810 * 12 10 9 20 20 H 0.96998 * 120.00327 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00477 * 0.02562 * 9 7 2 22 22 H 1.08993 * 109.64848 * 73.67511 * 14 12 10 23 23 H 1.09004 * 109.53632 * 313.31593 * 14 12 10 24 24 H 1.09002 * 110.31978 * 146.81226 * 15 14 12 25 25 H 1.08998 * 110.31660 * 268.90864 * 15 14 12 26 26 H 1.09001 * 110.78447 * 279.99485 * 19 12 10 27 27 H 1.09001 * 110.79109 * 43.45065 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 1 0.5946 -4.9200 0.8726 14 6 2.2324 -6.0422 -0.0016 15 6 1.4620 -7.3330 -0.3438 16 16 0.0480 -6.7892 -1.3687 17 8 0.2261 -7.2518 -2.7005 18 8 -1.1649 -7.0599 -0.6795 19 6 0.4023 -4.9897 -1.2972 20 1 -0.4850 0.8400 0.0004 21 1 0.3534 -2.3907 -0.0005 22 1 2.6890 -6.1381 0.9834 23 1 3.0067 -5.8684 -0.7490 24 1 2.0981 -8.0152 -0.9078 25 1 1.1062 -7.8141 0.5672 26 1 -0.5218 -4.4174 -1.2159 27 1 0.9796 -4.6731 -2.1659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070236046.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = -115.725404 kcal Electronic energy + Delta-G solvation = -14570.843058 eV Core-core repulsion = 11841.741678 eV Total energy + Delta-G solvation = -2729.101379 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.82825 -36.96673 -35.99248 -35.41759 -34.02442 -31.46510 -29.87171 -25.90255 -24.75148 -21.93407 -19.19528 -18.77254 -18.06250 -16.88175 -16.54735 -15.68390 -15.52746 -14.66059 -14.50557 -14.18851 -13.86944 -13.16221 -13.06535 -12.21405 -12.08917 -12.05011 -11.92011 -11.76455 -11.53100 -11.16600 -10.89561 -10.70419 -10.48070 -10.32643 -10.26542 -9.65322 -8.55983 -8.12187 -6.55007 -3.96483 0.11028 2.55842 3.08971 3.20031 3.25081 3.53941 3.74666 4.01346 4.09262 4.41757 4.72998 4.75497 4.87590 5.02617 5.10412 5.22470 5.57658 5.63135 5.76182 6.09434 6.17903 6.27544 7.43032 7.90295 8.43433 9.02556 9.37569 9.86839 10.62011 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.049434 B = 0.006509 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.273198 B = 4300.722940 C = 4607.550449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.449 3.551 11 O -0.591 6.591 12 C -0.102 4.102 13 H 0.105 0.895 14 C -0.091 4.091 15 C -0.590 4.590 16 S 2.384 3.616 17 O -0.945 6.945 18 O -0.942 6.942 19 C -0.571 4.571 20 H 0.274 0.726 21 H 0.394 0.606 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -10.048 -0.256 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.234 3.766 11 O -0.477 6.477 12 C -0.125 4.125 13 H 0.123 0.877 14 C -0.130 4.130 15 C -0.720 4.720 16 S 2.568 3.432 17 O -0.942 6.942 18 O -0.939 6.939 19 C -0.702 4.702 20 H 0.084 0.916 21 H 0.228 0.772 22 H 0.112 0.888 23 H 0.113 0.887 24 H 0.154 0.846 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.609 -10.405 -0.712 10.447 hybrid contribution 0.324 1.318 0.411 1.418 sum -0.285 -9.087 -0.301 9.097 Atomic orbital electron populations 1.69604 1.06020 1.28550 1.49448 1.25314 0.95655 0.99930 0.96801 0.85822 0.79247 0.80516 0.78512 1.20266 1.20803 1.19311 1.19752 0.93494 0.82104 1.48165 0.87677 1.41863 1.09373 1.04553 1.62727 1.19199 0.87841 0.84102 0.85480 1.90537 1.13556 1.86876 1.56744 1.21875 0.97288 0.97071 0.96246 0.87654 1.21668 0.97935 0.87371 1.06002 1.30489 1.18602 1.07367 1.15556 1.09228 0.77598 0.79993 0.76338 1.93591 1.86902 1.79213 1.34540 1.93604 1.41566 1.83464 1.75263 1.30690 1.10020 1.23352 1.06124 0.91582 0.77213 0.88769 0.88667 0.84564 0.84780 0.83972 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.47 13.05 55.50 0.72 -22.74 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.27 29.55 -169.99 -5.02 15.24 15 4 H -0.28 -5.97 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 7 C -0.31 -8.14 9.68 -14.94 -0.14 -8.28 15 8 H 0.11 2.93 7.16 -52.49 -0.38 2.55 15 9 N -0.55 -13.14 5.24 -10.96 -0.06 -13.20 15 10 C 0.45 9.74 7.09 -10.98 -0.08 9.66 15 11 O -0.59 -14.84 15.38 5.55 0.09 -14.75 15 12 C -0.10 -1.55 2.96 -90.23 -0.27 -1.81 15 13 H 0.11 1.38 8.14 -51.93 -0.42 0.96 15 14 C -0.09 -1.17 5.25 -25.66 -0.13 -1.31 15 15 C -0.59 -5.75 7.26 37.77 0.27 -5.47 15 16 S 2.38 28.78 6.12 -107.50 -0.66 28.12 15 17 O -0.95 -14.39 18.15 -57.71 -1.05 -15.44 15 18 O -0.94 -14.08 18.15 -57.71 -1.05 -15.13 15 19 C -0.57 -7.57 6.63 38.24 0.25 -7.31 15 20 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 21 H 0.39 8.96 7.90 -40.82 -0.32 8.63 15 22 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.09 1.32 7.68 -51.93 -0.40 0.92 15 24 H 0.14 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.13 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.14 1.74 8.14 -51.93 -0.42 1.32 15 27 H 0.14 1.89 8.10 -51.93 -0.42 1.47 15 LS Contribution 251.18 15.07 3.79 3.79 Total: -1.00 -34.14 251.18 -6.20 -40.34 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -2.77 Total: 7.74 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.19 Total: -13.96 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.67 Total: -35.94 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -2.01 Total: -45.32 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 28.78 SS G_CDS: -0.66 Total: 28.12 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -34.14 -6.20 -40.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070236046.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.390 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds