Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47164 * 270.00386 * 3 2 1 5 5 H 1.48510 * 109.46957 * 29.99804 * 3 2 1 6 6 H 1.48491 * 109.47393 * 150.00048 * 3 2 1 7 7 C 1.38951 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99591 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00083 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00116 * 180.02562 * 10 9 7 13 13 H 1.08999 * 110.04994 * 301.40162 * 12 10 9 14 14 C 1.53881 * 110.02552 * 179.97438 * 12 10 9 15 15 C 1.54164 * 108.70281 * 193.52717 * 14 12 10 16 16 S 1.82915 * 105.17474 * 27.85699 * 15 14 12 17 17 O 1.42106 * 109.35539 * 111.32536 * 16 15 14 18 18 O 1.42103 * 109.35557 * 244.52673 * 16 15 14 19 19 C 1.55049 * 110.02890 * 62.80810 * 12 10 9 20 20 H 0.96998 * 120.00327 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00477 * 0.02562 * 9 7 2 22 22 H 1.08993 * 109.64848 * 73.67511 * 14 12 10 23 23 H 1.09004 * 109.53632 * 313.31593 * 14 12 10 24 24 H 1.09002 * 110.31978 * 146.81226 * 15 14 12 25 25 H 1.08998 * 110.31660 * 268.90864 * 15 14 12 26 26 H 1.09001 * 110.78447 * 279.99485 * 19 12 10 27 27 H 1.09001 * 110.79109 * 43.45065 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 1 0.5946 -4.9200 0.8726 14 6 2.2324 -6.0422 -0.0016 15 6 1.4620 -7.3330 -0.3438 16 16 0.0480 -6.7892 -1.3687 17 8 0.2261 -7.2518 -2.7005 18 8 -1.1649 -7.0599 -0.6795 19 6 0.4023 -4.9897 -1.2972 20 1 -0.4850 0.8400 0.0004 21 1 0.3534 -2.3907 -0.0005 22 1 2.6890 -6.1381 0.9834 23 1 3.0067 -5.8684 -0.7490 24 1 2.0981 -8.0152 -0.9078 25 1 1.1062 -7.8141 0.5672 26 1 -0.5218 -4.4174 -1.2159 27 1 0.9796 -4.6731 -2.1659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070236046.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = -143.497521 kcal Electronic energy + Delta-G solvation = -14572.047347 eV Core-core repulsion = 11841.741678 eV Total energy + Delta-G solvation = -2730.305669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49562 -38.07558 -37.13129 -36.72995 -35.88312 -33.33819 -30.97944 -27.47094 -26.20064 -23.23820 -20.78902 -19.98846 -19.71487 -18.22939 -17.66610 -17.13667 -16.68976 -16.37603 -15.80686 -15.74674 -15.05515 -14.67910 -14.55219 -13.65324 -13.27507 -13.23298 -13.13952 -13.06732 -12.88903 -12.78812 -12.42555 -12.12336 -12.02196 -11.79839 -11.54386 -11.29338 -10.33884 -10.05774 -8.50356 -5.99422 -0.88870 1.35410 1.41984 1.54057 1.57311 1.96818 2.27296 2.64578 2.99051 3.10533 3.19875 3.60682 3.66752 3.82034 3.96137 4.07204 4.47801 4.55467 4.71804 4.90196 5.03574 5.22189 5.39087 5.95370 6.53231 7.07502 7.50863 8.04053 8.66641 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.049434 B = 0.006509 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.273198 B = 4300.722940 C = 4607.550449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.565 5.565 10 C 0.450 3.550 11 O -0.628 6.628 12 C -0.100 4.100 13 H 0.132 0.868 14 C -0.093 4.093 15 C -0.559 4.559 16 S 2.415 3.585 17 O -0.975 6.975 18 O -0.967 6.967 19 C -0.581 4.581 20 H 0.279 0.721 21 H 0.398 0.602 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.164 0.836 25 H 0.166 0.834 26 H 0.148 0.852 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -11.147 0.208 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.201 5.201 10 C 0.237 3.763 11 O -0.516 6.516 12 C -0.122 4.122 13 H 0.150 0.850 14 C -0.132 4.132 15 C -0.692 4.692 16 S 2.601 3.399 17 O -0.973 6.973 18 O -0.964 6.964 19 C -0.710 4.710 20 H 0.088 0.912 21 H 0.232 0.768 22 H 0.122 0.878 23 H 0.101 0.899 24 H 0.182 0.818 25 H 0.184 0.816 26 H 0.166 0.834 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.701 -11.497 -0.267 11.521 hybrid contribution 0.395 1.578 0.284 1.652 sum -0.306 -9.919 0.017 9.923 Atomic orbital electron populations 1.69663 1.06888 1.29483 1.49774 1.26047 0.96494 1.02493 0.96026 0.84929 0.77966 0.76853 0.78625 1.19731 1.19679 1.19571 1.19724 0.92886 0.83942 1.50155 0.89912 1.41946 1.09499 1.04724 1.63884 1.20295 0.87769 0.85610 0.82648 1.90507 1.15601 1.87910 1.57557 1.21905 0.97831 0.94086 0.98419 0.85000 1.21678 0.97426 0.87796 1.06327 1.30336 1.16290 1.06201 1.16339 1.08278 0.77642 0.78350 0.75593 1.93552 1.87539 1.79196 1.36973 1.93571 1.43917 1.83356 1.75544 1.30754 1.09892 1.25530 1.04832 0.91178 0.76797 0.87837 0.89890 0.81812 0.81582 0.83381 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.17 13.05 21.66 0.28 -47.88 15 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 15 3 Si 0.99 41.63 29.55 68.60 2.03 43.66 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 7 C -0.34 -18.41 9.68 84.04 0.81 -17.60 15 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 15 9 N -0.57 -27.44 5.24 -306.99 -1.61 -29.04 15 10 C 0.45 19.60 7.09 87.66 0.62 20.23 15 11 O -0.63 -32.00 15.38 -3.06 -0.05 -32.04 15 12 C -0.10 -2.89 2.96 -10.54 -0.03 -2.92 15 13 H 0.13 3.14 8.14 -2.39 -0.02 3.12 15 14 C -0.09 -2.16 5.25 31.29 0.16 -1.99 15 15 C -0.56 -8.55 7.26 72.38 0.53 -8.02 15 16 S 2.41 52.78 6.12 -56.49 -0.35 52.44 15 17 O -0.98 -28.01 18.15 -127.49 -2.31 -30.33 15 18 O -0.97 -26.67 18.15 -127.49 -2.31 -28.98 15 19 C -0.58 -14.79 6.63 72.68 0.48 -14.31 15 20 H 0.28 13.73 8.31 -92.71 -0.77 12.96 15 21 H 0.40 18.35 7.90 -92.71 -0.73 17.61 15 22 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.08 2.16 7.68 -2.39 -0.02 2.14 15 24 H 0.16 1.80 8.14 -2.39 -0.02 1.79 15 25 H 0.17 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.15 3.53 8.14 -2.39 -0.02 3.52 15 27 H 0.14 3.62 8.10 -2.39 -0.02 3.60 15 Total: -1.00 -73.89 251.18 -0.81 -74.70 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.46 Total: 22.16 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.04 Total: -24.67 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.32 Total: -76.93 kcal Atomic # 8 Polarization: -86.68 SS G_CDS: -4.67 Total: -91.35 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 52.78 SS G_CDS: -0.35 Total: 52.44 kcal Total: -73.89 -0.81 -74.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070236046.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.799 kcal (2) G-P(sol) polarization free energy of solvation -73.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds