Wall clock time and date at job start Mon Mar 30 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48491 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46867 * 299.99403 * 3 2 1 6 6 H 1.48493 * 109.47301 * 59.99536 * 3 2 1 7 7 C 1.38949 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99932 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99703 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00645 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99894 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.53774 * 59.63402 * 12 10 9 14 14 C 1.53875 * 109.64782 * 180.02562 * 12 10 9 15 15 C 1.55045 * 106.62127 * 167.03521 * 14 12 10 16 16 S 1.83283 * 102.56843 * 317.55876 * 15 14 12 17 17 O 1.42105 * 109.35397 * 136.61647 * 16 15 14 18 18 O 1.42094 * 109.35872 * 269.68783 * 16 15 14 19 19 C 1.54648 * 109.56513 * 299.23909 * 12 10 9 20 20 H 0.97002 * 120.00505 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99864 * 359.97438 * 9 7 2 22 22 H 1.08996 * 110.03083 * 47.74105 * 14 12 10 23 23 H 1.08998 * 110.06265 * 286.34244 * 14 12 10 24 24 H 1.09006 * 110.78616 * 199.29355 * 15 14 12 25 25 H 1.08997 * 110.96168 * 75.91061 * 15 14 12 26 26 H 1.08998 * 110.39190 * 93.34628 * 19 12 10 27 27 H 1.08994 * 110.44578 * 331.01787 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 1 0.6115 -4.9192 -0.8849 14 6 2.2402 -6.0356 0.0016 15 6 1.4241 -7.3109 0.3355 16 16 0.3210 -6.7373 1.6822 17 8 -0.9910 -7.2364 1.4610 18 8 0.9572 -6.9497 2.9349 19 6 0.3690 -4.9553 1.2730 20 1 -0.4851 0.8400 -0.0004 21 1 0.3533 -2.3906 0.0005 22 1 3.0067 -5.8738 0.7595 23 1 2.7019 -6.1344 -0.9808 24 1 2.0791 -8.1088 0.6855 25 1 0.8437 -7.6392 -0.5266 26 1 -0.6365 -4.5867 1.0700 27 1 0.8221 -4.3917 2.0885 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070236047.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:54 Heat of formation + Delta-G solvation = -115.651827 kcal Electronic energy + Delta-G solvation = -14590.162455 eV Core-core repulsion = 11861.064266 eV Total energy + Delta-G solvation = -2729.098189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84724 -36.94446 -35.97743 -35.38730 -34.02727 -31.47081 -29.85265 -25.91720 -24.74841 -21.92723 -19.17843 -18.76424 -18.05980 -16.84504 -16.54502 -15.78296 -15.53978 -14.67789 -14.43374 -14.14641 -13.85504 -13.20407 -12.93777 -12.15625 -12.11967 -12.08550 -11.92611 -11.78529 -11.53429 -11.18303 -10.98722 -10.66592 -10.43017 -10.32909 -10.23922 -9.66441 -8.55855 -8.12149 -6.55252 -3.96632 0.12326 2.58341 3.07504 3.20402 3.27010 3.54377 3.76599 3.98888 4.11349 4.44756 4.68995 4.74164 4.87713 5.01410 5.15485 5.23900 5.52023 5.62924 5.76881 6.09612 6.17427 6.25439 7.43220 7.90594 8.43414 9.02681 9.37635 9.86896 10.61844 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.049274 B = 0.006540 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.114549 B = 4279.990931 C = 4548.996873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.445 3.555 11 O -0.591 6.591 12 C -0.095 4.095 13 H 0.104 0.896 14 C -0.096 4.096 15 C -0.587 4.587 16 S 2.387 3.613 17 O -0.947 6.947 18 O -0.941 6.941 19 C -0.580 4.580 20 H 0.273 0.727 21 H 0.394 0.606 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.143 0.857 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -10.110 -0.407 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.229 3.771 11 O -0.476 6.476 12 C -0.118 4.118 13 H 0.122 0.878 14 C -0.135 4.135 15 C -0.717 4.717 16 S 2.571 3.429 17 O -0.944 6.944 18 O -0.938 6.938 19 C -0.711 4.711 20 H 0.083 0.917 21 H 0.228 0.772 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.154 0.846 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.925 -10.437 0.331 10.483 hybrid contribution 0.063 1.358 -0.657 1.510 sum -0.862 -9.079 -0.327 9.126 Atomic orbital electron populations 1.69612 1.06022 1.28424 1.49629 1.25313 0.95655 0.99933 0.96831 0.85768 0.79730 0.80847 0.77833 1.19113 1.20628 1.20615 1.19811 0.93536 0.82113 1.47990 0.87620 1.41883 1.09371 1.04575 1.62812 1.19355 0.87938 0.84288 0.85472 1.90541 1.13572 1.86915 1.56619 1.21690 0.96710 0.96807 0.96606 0.87806 1.21983 0.97512 0.87506 1.06480 1.30619 1.15087 1.07232 1.18750 1.09135 0.76399 0.79768 0.77597 1.93587 1.36087 1.78068 1.86662 1.93603 1.77103 1.84410 1.38710 1.30633 1.09215 1.23745 1.07479 0.91657 0.77212 0.88440 0.88241 0.84621 0.84666 0.83877 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.47 13.05 55.50 0.72 -22.74 15 2 C 0.03 0.65 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 20.30 29.55 -169.99 -5.02 15.28 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.28 15 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 15 9 N -0.55 -13.15 5.20 -10.96 -0.06 -13.20 15 10 C 0.44 9.64 6.96 -10.98 -0.08 9.57 15 11 O -0.59 -14.89 15.38 5.55 0.09 -14.81 15 12 C -0.10 -1.43 2.96 -90.45 -0.27 -1.70 15 13 H 0.10 1.30 8.14 -51.93 -0.42 0.88 15 14 C -0.10 -1.24 5.27 -25.19 -0.13 -1.38 15 15 C -0.59 -5.69 7.31 38.24 0.28 -5.41 15 16 S 2.39 29.28 6.09 -107.50 -0.66 28.63 15 17 O -0.95 -14.09 18.15 -57.73 -1.05 -15.13 15 18 O -0.94 -14.89 18.14 -57.73 -1.05 -15.93 15 19 C -0.58 -7.71 6.63 38.02 0.25 -7.46 15 20 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 21 H 0.39 8.91 7.83 -40.82 -0.32 8.59 15 22 H 0.10 1.38 7.72 -51.93 -0.40 0.98 15 23 H 0.10 1.22 8.14 -51.93 -0.42 0.80 15 24 H 0.14 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.14 1.03 8.14 -51.93 -0.42 0.60 15 26 H 0.14 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.14 2.04 7.89 -51.93 -0.41 1.63 15 LS Contribution 250.81 15.07 3.78 3.78 Total: -1.00 -34.34 250.81 -6.18 -40.53 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.75 Total: 7.71 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.19 Total: -14.10 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.67 Total: -35.94 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -2.01 Total: -45.88 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 29.28 SS G_CDS: -0.66 Total: 28.63 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.34 -6.18 -40.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070236047.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.127 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds