Wall clock time and date at job start Mon Mar 30 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48491 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46867 * 299.99403 * 3 2 1 6 6 H 1.48493 * 109.47301 * 59.99536 * 3 2 1 7 7 C 1.38949 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99932 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99703 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00645 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99894 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.53774 * 59.63402 * 12 10 9 14 14 C 1.53875 * 109.64782 * 180.02562 * 12 10 9 15 15 C 1.55045 * 106.62127 * 167.03521 * 14 12 10 16 16 S 1.83283 * 102.56843 * 317.55876 * 15 14 12 17 17 O 1.42105 * 109.35397 * 136.61647 * 16 15 14 18 18 O 1.42094 * 109.35872 * 269.68783 * 16 15 14 19 19 C 1.54648 * 109.56513 * 299.23909 * 12 10 9 20 20 H 0.97002 * 120.00505 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99864 * 359.97438 * 9 7 2 22 22 H 1.08996 * 110.03083 * 47.74105 * 14 12 10 23 23 H 1.08998 * 110.06265 * 286.34244 * 14 12 10 24 24 H 1.09006 * 110.78616 * 199.29355 * 15 14 12 25 25 H 1.08997 * 110.96168 * 75.91061 * 15 14 12 26 26 H 1.08998 * 110.39190 * 93.34628 * 19 12 10 27 27 H 1.08994 * 110.44578 * 331.01787 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 1 0.6115 -4.9192 -0.8849 14 6 2.2402 -6.0356 0.0016 15 6 1.4241 -7.3109 0.3355 16 16 0.3210 -6.7373 1.6822 17 8 -0.9910 -7.2364 1.4610 18 8 0.9572 -6.9497 2.9349 19 6 0.3690 -4.9553 1.2730 20 1 -0.4851 0.8400 -0.0004 21 1 0.3533 -2.3906 0.0005 22 1 3.0067 -5.8738 0.7595 23 1 2.7019 -6.1344 -0.9808 24 1 2.0791 -8.1088 0.6855 25 1 0.8437 -7.6392 -0.5266 26 1 -0.6365 -4.5867 1.0700 27 1 0.8221 -4.3917 2.0885 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070236047.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:54 Heat of formation + Delta-G solvation = -143.780486 kcal Electronic energy + Delta-G solvation = -14591.382205 eV Core-core repulsion = 11861.064266 eV Total energy + Delta-G solvation = -2730.317939 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51115 -38.06142 -37.12434 -36.70461 -35.88690 -33.34181 -30.96600 -27.47713 -26.20651 -23.22433 -20.78355 -19.94757 -19.75720 -18.13368 -17.71487 -17.23917 -16.62908 -16.45759 -15.80451 -15.75218 -14.95456 -14.73267 -14.43349 -13.65060 -13.29059 -13.22461 -13.11638 -13.04887 -12.94346 -12.80995 -12.42135 -12.14030 -12.10251 -11.76109 -11.55307 -11.25267 -10.34460 -10.05552 -8.50888 -5.99692 -0.87946 1.33850 1.41685 1.55034 1.59395 1.97083 2.27052 2.65071 2.95492 3.14449 3.22570 3.56895 3.67639 3.77743 3.97801 4.11906 4.47558 4.63062 4.68092 4.87330 5.03094 5.20406 5.39073 5.95426 6.53421 7.07604 7.51078 8.04663 8.66274 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.049274 B = 0.006540 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.114549 B = 4279.990931 C = 4548.996873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.630 6.630 12 C -0.091 4.091 13 H 0.138 0.862 14 C -0.101 4.101 15 C -0.552 4.552 16 S 2.411 3.589 17 O -0.969 6.969 18 O -0.979 6.979 19 C -0.588 4.588 20 H 0.279 0.721 21 H 0.399 0.601 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.164 0.836 25 H 0.172 0.828 26 H 0.159 0.841 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -11.223 -1.263 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.201 5.201 10 C 0.231 3.769 11 O -0.517 6.517 12 C -0.113 4.113 13 H 0.156 0.844 14 C -0.140 4.140 15 C -0.684 4.684 16 S 2.598 3.402 17 O -0.966 6.966 18 O -0.976 6.976 19 C -0.717 4.717 20 H 0.088 0.912 21 H 0.233 0.767 22 H 0.098 0.902 23 H 0.130 0.870 24 H 0.181 0.819 25 H 0.189 0.811 26 H 0.177 0.823 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.357 -11.543 -0.503 11.633 hybrid contribution 0.233 1.628 -0.419 1.697 sum -1.125 -9.915 -0.922 10.021 Atomic orbital electron populations 1.69665 1.06838 1.29398 1.49884 1.26032 0.96501 1.02444 0.96059 0.84883 0.78125 0.77144 0.78288 1.19686 1.19568 1.19805 1.19757 0.92862 0.84016 1.50046 0.90034 1.41958 1.09520 1.04698 1.63927 1.20520 0.87878 0.85889 0.82618 1.90511 1.15734 1.87974 1.57512 1.21748 0.97175 0.93471 0.98901 0.84417 1.22008 0.97092 0.88131 1.06756 1.30473 1.13912 1.06149 1.17889 1.08362 0.75956 0.78394 0.77517 1.93556 1.38022 1.77934 1.87100 1.93553 1.77667 1.84553 1.41873 1.30667 1.09605 1.25341 1.06072 0.91189 0.76710 0.90216 0.87000 0.81852 0.81062 0.82260 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.00 13.05 21.66 0.28 -47.72 15 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 15 3 Si 0.99 41.74 29.55 68.60 2.03 43.77 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 7 C -0.34 -18.44 9.68 84.04 0.81 -17.63 15 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 15 9 N -0.57 -27.37 5.20 -306.99 -1.60 -28.97 15 10 C 0.44 19.34 6.96 87.66 0.61 19.95 15 11 O -0.63 -32.34 15.38 -3.05 -0.05 -32.39 15 12 C -0.09 -2.56 2.96 -10.68 -0.03 -2.59 15 13 H 0.14 3.00 8.14 -2.39 -0.02 2.98 15 14 C -0.10 -2.34 5.27 31.59 0.17 -2.18 15 15 C -0.55 -8.28 7.31 72.68 0.53 -7.75 15 16 S 2.41 54.10 6.09 -56.49 -0.34 53.75 15 17 O -0.97 -26.53 18.15 -127.47 -2.31 -28.84 15 18 O -0.98 -30.02 18.14 -127.47 -2.31 -32.33 15 19 C -0.59 -14.96 6.63 72.54 0.48 -14.48 15 20 H 0.28 13.65 8.31 -92.71 -0.77 12.88 15 21 H 0.40 18.20 7.83 -92.70 -0.73 17.47 15 22 H 0.08 2.17 7.72 -2.39 -0.02 2.15 15 23 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.16 1.76 8.14 -2.38 -0.02 1.74 15 25 H 0.17 1.53 8.14 -2.39 -0.02 1.51 15 26 H 0.16 3.45 8.14 -2.39 -0.02 3.43 15 27 H 0.13 3.66 7.89 -2.39 -0.02 3.64 15 Total: -1.00 -75.17 250.81 -0.80 -75.97 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.47 Total: 21.49 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 3.04 Total: -24.73 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.31 Total: -76.69 kcal Atomic # 8 Polarization: -88.89 SS G_CDS: -4.67 Total: -93.57 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 54.10 SS G_CDS: -0.34 Total: 53.75 kcal Total: -75.17 -0.80 -75.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070236047.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.809 kcal (2) G-P(sol) polarization free energy of solvation -75.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds