Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86794 * 120.00477 * 2 1 4 4 H 1.48508 * 109.46745 * 269.99953 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99731 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99968 * 3 2 1 7 7 C 1.40059 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.40817 * 119.99812 * 0.28165 * 7 2 1 10 10 C 1.41073 * 120.08177 * 179.72470 * 9 7 2 11 11 N 1.31467 * 119.89443 * 179.97438 * 10 9 7 12 12 C 1.33471 * 120.07846 * 0.02562 * 11 10 9 13 13 C 1.47585 * 119.92024 * 179.97438 * 12 11 10 14 14 C 1.35370 * 123.08689 * 359.97438 * 13 12 11 15 15 S 1.70965 * 108.75816 * 179.97438 * 14 13 12 16 16 C 1.70791 * 91.05335 * 0.02562 * 15 14 13 17 17 N 1.28818 * 110.48453 * 359.74835 * 16 15 14 18 18 C 1.40350 * 120.16926 * 359.97438 * 12 11 10 19 19 N 1.31391 * 120.10434 * 359.71847 * 18 12 11 20 20 H 0.97005 * 119.99639 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.05573 * 359.97120 * 10 9 7 22 22 H 1.08002 * 125.62035 * 0.02562 * 14 13 12 23 23 H 1.07998 * 124.76041 * 179.97438 * 16 15 14 24 24 H 1.08004 * 119.94868 * 180.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4892 2.0462 -1.4002 5 1 1.4391 2.6526 0.7000 6 1 3.5392 1.4401 0.7000 7 6 2.0077 -1.2130 0.0005 8 1 3.0878 -1.2130 0.0001 9 6 1.3035 -2.4324 -0.0049 10 6 2.0070 -3.6552 -0.0102 11 7 1.3459 -4.7915 -0.0148 12 6 0.0112 -4.7889 -0.0149 13 6 -0.7275 -6.0665 -0.0206 14 6 -0.1155 -7.2740 -0.0264 15 16 -1.3109 -8.4962 -0.0310 16 6 -2.5537 -7.3247 -0.0257 17 7 -2.0540 -6.1374 -0.0157 18 6 -0.6918 -3.5741 -0.0096 19 7 -0.0380 -2.4344 0.0010 20 1 -0.4850 0.8401 -0.0004 21 1 3.0870 -3.6579 -0.0106 22 1 0.9519 -7.4381 -0.0271 23 1 -3.6104 -7.5479 -0.0266 24 1 -1.7718 -3.5761 -0.0093 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074210602.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = 60.557125 kcal Electronic energy + Delta-G solvation = -13049.657696 eV Core-core repulsion = 10667.802171 eV Total energy + Delta-G solvation = -2381.855525 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.18239 -40.04042 -36.07433 -34.09097 -32.70288 -30.84415 -28.23012 -26.13672 -24.35996 -23.95256 -20.89660 -19.55520 -19.24941 -17.94382 -16.94978 -16.54402 -15.90240 -15.71108 -15.66647 -14.62998 -14.49884 -14.02835 -13.73827 -13.33275 -13.02031 -12.70950 -12.43902 -12.01856 -11.81938 -11.54662 -11.09704 -10.61286 -10.52511 -10.34153 -9.42618 -9.15906 -8.47413 -6.69373 -0.22715 0.54413 0.64690 0.93421 1.01374 1.40584 1.48571 1.57704 2.09290 2.15571 2.79117 3.23959 3.76941 3.96300 4.16436 4.27203 4.52989 4.56041 4.70669 4.95522 5.08318 5.15307 5.24499 5.67259 6.01283 6.37544 6.58061 6.86876 7.22020 7.82727 8.19959 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.078960 B = 0.005629 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.526402 B = 4973.421974 C = 5318.095647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.012 3.988 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.246 1.246 7 C -0.408 4.408 8 H 0.115 0.885 9 C 0.165 3.835 10 C -0.062 4.062 11 N -0.420 5.420 12 C -0.074 4.074 13 C 0.123 3.877 14 C -0.307 4.307 15 S 0.240 5.760 16 C -0.001 4.001 17 N -0.498 5.498 18 C 0.117 3.883 19 N -0.494 5.494 20 H 0.289 0.711 21 H 0.161 0.839 22 H 0.171 0.829 23 H 0.237 0.763 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -8.411 -0.055 8.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.169 1.169 7 C -0.439 4.439 8 H 0.133 0.867 9 C 0.041 3.959 10 C -0.236 4.236 11 N -0.132 5.132 12 C -0.211 4.211 13 C -0.009 4.009 14 C -0.448 4.448 15 S 0.493 5.507 16 C -0.298 4.298 17 N -0.213 5.213 18 C -0.055 4.055 19 N -0.211 5.211 20 H 0.100 0.900 21 H 0.179 0.821 22 H 0.188 0.812 23 H 0.253 0.747 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.320 -8.909 -0.037 9.206 hybrid contribution 0.642 1.605 -0.017 1.728 sum -1.678 -7.304 -0.055 7.495 Atomic orbital electron populations 1.70214 1.09561 1.30514 1.25350 1.27371 0.95848 1.05581 0.92421 0.84884 0.79029 0.74126 0.79821 1.18369 1.19220 1.16886 1.20265 0.96108 0.89598 1.37930 0.86748 1.20001 0.89770 0.94960 0.91204 1.23467 1.00208 0.88229 1.11670 1.67559 1.07746 1.30762 1.07173 1.19186 0.89942 0.91667 1.20261 1.18420 0.87744 0.92484 1.02295 1.26451 1.06741 0.96613 1.14996 1.81976 0.94201 1.09354 1.65191 1.29060 1.07059 0.90208 1.03507 1.66559 1.10780 1.26650 1.17328 1.23707 1.00430 0.89052 0.92313 1.69538 1.08336 1.25677 1.17574 0.89993 0.82138 0.81185 0.74652 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.37 11.46 21.84 0.25 -38.12 14 2 C 0.01 0.59 5.50 85.30 0.47 1.06 14 3 Si 1.00 34.83 29.56 68.60 2.03 36.86 14 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 14 5 H -0.27 -8.98 7.11 99.48 0.71 -8.28 14 6 H -0.25 -8.00 7.11 99.48 0.71 -7.30 14 7 C -0.41 -20.76 9.13 23.34 0.21 -20.55 14 8 H 0.11 5.12 7.85 -2.91 -0.02 5.10 14 9 C 0.16 9.13 6.54 40.12 0.26 9.39 14 10 C -0.06 -3.14 10.97 85.44 0.94 -2.20 14 11 N -0.42 -21.53 9.97 -182.19 -1.82 -23.35 14 12 C -0.07 -3.77 6.75 41.88 0.28 -3.49 14 13 C 0.12 5.30 6.64 40.80 0.27 5.57 14 14 C -0.31 -10.96 10.60 67.16 0.71 -10.25 14 15 S 0.24 5.64 22.97 -56.49 -1.30 4.34 14 16 C 0.00 -0.02 12.18 130.68 1.59 1.57 14 17 N -0.50 -19.13 10.00 -192.97 -1.93 -21.06 14 18 C 0.12 6.31 10.82 85.27 0.92 7.23 14 19 N -0.49 -28.70 8.00 -187.61 -1.50 -30.20 14 20 H 0.29 13.41 8.29 -92.70 -0.77 12.64 14 21 H 0.16 7.11 8.06 -2.91 -0.02 7.09 14 22 H 0.17 6.09 7.98 -2.91 -0.02 6.07 14 23 H 0.24 3.84 8.06 -2.91 -0.02 3.82 14 24 H 0.14 7.25 7.69 -2.91 -0.02 7.23 14 Total: -1.00 -67.45 240.37 2.63 -64.81 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.24 Total: 18.38 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.66 Total: -11.67 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -5.00 Total: -112.73 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.30 Total: 4.34 kcal Total: -67.45 2.63 -64.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074210602.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.372 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds