Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31037 * 1 3 3 Si 1.86801 * 119.99641 * 2 1 4 4 H 1.48499 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47008 * 300.00376 * 3 2 1 6 6 H 1.48500 * 109.47036 * 60.00109 * 3 2 1 7 7 C 1.39676 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99331 * 179.97438 * 7 2 1 9 9 C 1.41168 * 120.00561 * 0.02562 * 7 2 1 10 10 C 1.38030 * 122.77829 * 179.97438 * 9 7 2 11 11 S 1.70997 * 108.87643 * 179.97438 * 10 9 7 12 12 C 1.75906 * 90.76813 * 0.02562 * 11 10 9 13 13 C 1.47805 * 125.06616 * 179.97438 * 12 11 10 14 14 C 1.39943 * 120.19745 * 0.02562 * 13 12 11 15 15 C 1.38628 * 117.87973 * 180.02562 * 14 13 12 16 16 C 1.38735 * 118.08626 * 0.02562 * 15 14 13 17 17 N 1.32024 * 120.10828 * 359.97438 * 16 15 14 18 18 N 1.28354 * 122.32661 * 359.97438 * 17 16 15 19 19 N 1.29819 * 109.87152 * 0.24012 * 12 11 10 20 20 H 0.96998 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.08000 * 125.55939 * 0.04167 * 10 9 7 22 22 H 1.07998 * 121.06284 * 0.04476 * 14 13 12 23 23 H 1.08000 * 120.95572 * 180.02562 * 15 14 13 24 24 H 1.08006 * 119.94643 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.7043 1.3465 -0.0006 5 1 1.8854 2.3965 -1.2125 6 1 1.8855 2.3965 1.2125 7 6 2.0087 -1.2096 -0.0005 8 1 3.0888 -1.2095 -0.0010 9 6 1.3030 -2.4323 -0.0016 10 6 1.9345 -3.6596 -0.0027 11 16 0.7489 -4.8918 -0.0031 12 6 -0.5349 -3.6892 -0.0026 13 6 -1.9817 -3.9916 -0.0031 14 6 -2.4233 -5.3196 -0.0036 15 6 -3.7906 -5.5480 -0.0047 16 6 -4.6366 -4.4485 -0.0057 17 7 -4.1352 -3.2271 -0.0052 18 7 -2.8712 -3.0041 -0.0032 19 7 -0.0223 -2.4965 -0.0073 20 1 -0.4850 0.8400 0.0004 21 1 3.0031 -3.8161 -0.0022 22 1 -1.7213 -6.1402 -0.0029 23 1 -4.1859 -6.5531 -0.0047 24 1 -5.7071 -4.5918 -0.0061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074210614.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = 100.325432 kcal Electronic energy + Delta-G solvation = -13132.730014 eV Core-core repulsion = 10752.598972 eV Total energy + Delta-G solvation = -2380.131041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.50300 -37.86273 -33.54590 -32.92386 -32.34372 -29.00919 -25.74952 -25.14806 -24.21920 -21.91570 -19.30698 -17.83875 -16.69167 -16.47522 -15.94576 -15.23571 -14.63852 -14.62462 -13.63618 -13.05976 -12.84409 -12.83850 -11.90452 -11.61316 -11.25312 -10.84354 -10.64818 -10.44583 -10.06155 -9.97575 -9.78882 -9.28225 -9.22268 -8.18097 -8.07579 -7.41832 -6.52351 -4.41369 0.85271 1.08190 2.32908 2.54475 3.05732 3.11676 3.16835 3.46099 3.89630 3.99958 4.37977 4.41257 4.59701 4.82076 4.90717 5.17590 5.45508 5.49588 5.84807 6.13340 6.35932 6.66365 6.97419 7.18423 7.35059 8.13468 8.45614 8.82038 9.09476 9.48073 10.33183 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.008419 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.650692 B = 3325.136490 C = 4197.944066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.427 4.427 8 H 0.088 0.912 9 C 0.219 3.781 10 C -0.442 4.442 11 S 0.004 5.996 12 C 0.060 3.940 13 C 0.166 3.834 14 C -0.112 4.112 15 C -0.119 4.119 16 C 0.019 3.981 17 N -0.242 5.242 18 N -0.194 5.194 19 N -0.345 5.345 20 H 0.278 0.722 21 H 0.145 0.855 22 H 0.150 0.850 23 H 0.149 0.851 24 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -8.653 0.003 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.158 4.158 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.095 3.905 10 C -0.583 4.583 11 S 0.251 5.749 12 C -0.220 4.220 13 C 0.020 3.980 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.146 4.146 17 N -0.083 5.083 18 N -0.039 5.039 19 N -0.061 5.061 20 H 0.089 0.911 21 H 0.162 0.838 22 H 0.167 0.833 23 H 0.167 0.833 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.100 -7.418 -0.004 9.604 hybrid contribution 1.208 -0.085 0.004 1.211 sum -4.891 -7.502 -0.001 8.956 Atomic orbital electron populations 1.70138 1.06771 1.28451 1.30165 1.26052 0.95064 1.01218 0.93463 0.86186 0.80571 0.81001 0.78555 1.18482 1.19840 1.19835 1.19020 0.94218 0.88119 1.44731 0.89432 1.17962 0.85154 0.93365 0.93999 1.25435 1.01278 0.93715 1.37859 1.82335 1.00783 1.14992 1.76775 1.25145 0.93765 0.91969 1.11136 1.20546 0.92500 0.90437 0.94489 1.22363 0.96867 0.97309 0.97755 1.22227 0.93338 1.01111 0.98127 1.24328 1.02122 0.90456 0.97713 1.73221 1.06442 1.20694 1.07985 1.73706 0.95223 1.28107 1.06861 1.67417 1.12131 1.18696 1.07811 0.91132 0.83778 0.83271 0.83339 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.49 11.69 55.53 0.65 -19.84 14 2 C 0.07 1.74 5.49 -17.35 -0.10 1.65 14 3 Si 0.91 19.31 29.56 -169.99 -5.02 14.29 14 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 14 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 14 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 7 C -0.43 -11.75 9.23 -37.93 -0.35 -12.10 14 8 H 0.09 2.26 7.84 -52.48 -0.41 1.85 14 9 C 0.22 6.12 6.45 -86.46 -0.56 5.57 14 10 C -0.44 -11.00 10.99 30.66 0.34 -10.66 14 11 S 0.00 0.08 22.13 -107.50 -2.38 -2.30 14 12 C 0.06 1.43 7.38 -14.49 -0.11 1.33 14 13 C 0.17 3.49 6.83 -82.85 -0.57 2.93 14 14 C -0.11 -1.73 9.73 -38.80 -0.38 -2.10 14 15 C -0.12 -1.44 10.20 -39.25 -0.40 -1.84 14 16 C 0.02 0.25 11.31 -17.29 -0.20 0.06 14 17 N -0.24 -4.61 11.50 30.59 0.35 -4.26 14 18 N -0.19 -4.41 11.43 33.30 0.38 -4.03 14 19 N -0.35 -9.68 8.38 -9.17 -0.08 -9.76 14 20 H 0.28 7.11 8.30 -40.82 -0.34 6.77 14 21 H 0.14 3.35 8.06 -52.49 -0.42 2.93 14 22 H 0.15 1.95 7.36 -52.49 -0.39 1.56 14 23 H 0.15 1.10 8.06 -52.49 -0.42 0.68 14 24 H 0.17 1.52 8.06 -52.48 -0.42 1.10 14 LS Contribution 241.29 15.07 3.64 3.64 Total: -1.00 -32.12 241.29 -5.98 -38.09 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -1.20 Total: -0.67 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.31 Total: -15.17 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 1.30 Total: -37.87 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.38 Total: -2.30 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.12 -5.98 -38.09 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074210614.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.419 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds