Wall clock time and date at job start Mon Mar 30 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31037 * 1 3 3 Si 1.86801 * 119.99641 * 2 1 4 4 H 1.48499 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47008 * 300.00376 * 3 2 1 6 6 H 1.48500 * 109.47036 * 60.00109 * 3 2 1 7 7 C 1.39676 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99331 * 179.97438 * 7 2 1 9 9 C 1.41168 * 120.00561 * 0.02562 * 7 2 1 10 10 C 1.38030 * 122.77829 * 179.97438 * 9 7 2 11 11 S 1.70997 * 108.87643 * 179.97438 * 10 9 7 12 12 C 1.75906 * 90.76813 * 0.02562 * 11 10 9 13 13 C 1.47805 * 125.06616 * 179.97438 * 12 11 10 14 14 C 1.39943 * 120.19745 * 0.02562 * 13 12 11 15 15 C 1.38628 * 117.87973 * 180.02562 * 14 13 12 16 16 C 1.38735 * 118.08626 * 0.02562 * 15 14 13 17 17 N 1.32024 * 120.10828 * 359.97438 * 16 15 14 18 18 N 1.28354 * 122.32661 * 359.97438 * 17 16 15 19 19 N 1.29819 * 109.87152 * 0.24012 * 12 11 10 20 20 H 0.96998 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.08000 * 125.55939 * 0.04167 * 10 9 7 22 22 H 1.07998 * 121.06284 * 0.04476 * 14 13 12 23 23 H 1.08000 * 120.95572 * 180.02562 * 15 14 13 24 24 H 1.08006 * 119.94643 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.7043 1.3465 -0.0006 5 1 1.8854 2.3965 -1.2125 6 1 1.8855 2.3965 1.2125 7 6 2.0087 -1.2096 -0.0005 8 1 3.0888 -1.2095 -0.0010 9 6 1.3030 -2.4323 -0.0016 10 6 1.9345 -3.6596 -0.0027 11 16 0.7489 -4.8918 -0.0031 12 6 -0.5349 -3.6892 -0.0026 13 6 -1.9817 -3.9916 -0.0031 14 6 -2.4233 -5.3196 -0.0036 15 6 -3.7906 -5.5480 -0.0047 16 6 -4.6366 -4.4485 -0.0057 17 7 -4.1352 -3.2271 -0.0052 18 7 -2.8712 -3.0041 -0.0032 19 7 -0.0223 -2.4965 -0.0073 20 1 -0.4850 0.8400 0.0004 21 1 3.0031 -3.8161 -0.0022 22 1 -1.7213 -6.1402 -0.0029 23 1 -4.1859 -6.5531 -0.0047 24 1 -5.7071 -4.5918 -0.0061 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074210614.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:07 Heat of formation + Delta-G solvation = 76.929067 kcal Electronic energy + Delta-G solvation = -13133.744556 eV Core-core repulsion = 10752.598972 eV Total energy + Delta-G solvation = -2381.145584 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.81611 -39.73729 -35.34682 -34.25681 -33.78510 -30.83563 -27.69290 -26.69821 -25.47712 -23.54046 -21.11258 -19.61146 -18.00398 -17.90096 -17.41476 -17.06804 -16.30133 -16.05141 -15.14173 -14.67243 -14.51565 -14.08328 -13.70783 -13.44030 -12.95652 -12.68340 -12.24963 -12.00283 -11.60795 -11.59158 -11.18221 -11.01509 -10.57092 -9.99959 -9.88662 -9.27457 -8.43620 -6.42725 -0.56544 -0.08843 0.66736 0.77847 1.36267 1.39672 1.53118 1.59590 2.22501 2.29464 2.75214 2.99678 3.40250 3.46133 3.70029 3.82540 4.11188 4.30022 4.63380 4.85563 4.99404 5.10192 5.24896 5.32267 5.41091 6.12585 6.49671 6.83521 7.59581 7.82236 8.43334 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.008419 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.650692 B = 3325.136490 C = 4197.944066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.020 3.980 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.468 4.468 8 H 0.090 0.910 9 C 0.187 3.813 10 C -0.468 4.468 11 S 0.104 5.896 12 C 0.048 3.952 13 C 0.128 3.872 14 C -0.110 4.110 15 C -0.086 4.086 16 C 0.034 3.966 17 N -0.284 5.284 18 N -0.255 5.255 19 N -0.406 5.406 20 H 0.279 0.721 21 H 0.153 0.847 22 H 0.175 0.825 23 H 0.214 0.786 24 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -11.234 0.003 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.200 4.200 3 Si 0.813 3.187 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.109 0.891 9 C 0.062 3.938 10 C -0.608 4.608 11 S 0.353 5.647 12 C -0.231 4.231 13 C -0.020 4.020 14 C -0.140 4.140 15 C -0.115 4.115 16 C -0.132 4.132 17 N -0.125 5.125 18 N -0.098 5.098 19 N -0.123 5.123 20 H 0.089 0.911 21 H 0.171 0.829 22 H 0.192 0.808 23 H 0.231 0.769 24 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.349 -10.028 -0.004 12.433 hybrid contribution 1.389 0.379 0.003 1.440 sum -5.960 -9.649 -0.001 11.341 Atomic orbital electron populations 1.70296 1.08635 1.29297 1.31985 1.27027 0.95810 1.04864 0.92289 0.85001 0.79300 0.75698 0.78701 1.17426 1.19211 1.19192 1.19378 0.94594 0.89364 1.46929 0.89146 1.18410 0.86047 0.94635 0.94709 1.25864 1.02993 0.94994 1.36983 1.81627 0.97109 1.11254 1.74712 1.25944 0.96260 0.92259 1.08647 1.20645 0.90910 0.92817 0.97638 1.22672 0.99228 0.95202 0.96936 1.22926 0.91264 1.03466 0.93806 1.25243 1.04817 0.89191 0.93935 1.73095 1.05090 1.24072 1.10209 1.73552 0.96885 1.30385 1.08982 1.67430 1.12296 1.21228 1.11304 0.91108 0.82932 0.80784 0.76921 0.76444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -46.13 11.69 21.79 0.25 -45.88 14 2 C 0.02 1.08 5.49 85.16 0.47 1.54 14 3 Si 0.99 41.19 29.56 68.60 2.03 43.22 14 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 14 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 14 6 H -0.27 -10.68 7.11 99.48 0.71 -9.98 14 7 C -0.47 -27.11 9.23 23.34 0.22 -26.89 14 8 H 0.09 4.90 7.84 -2.91 -0.02 4.87 14 9 C 0.19 10.91 6.45 39.68 0.26 11.17 14 10 C -0.47 -23.70 10.99 67.77 0.75 -22.96 14 11 S 0.10 4.28 22.13 -56.49 -1.25 3.03 14 12 C 0.05 2.37 7.38 87.52 0.65 3.02 14 13 C 0.13 5.36 6.83 41.93 0.29 5.64 14 14 C -0.11 -3.03 9.73 22.78 0.22 -2.81 14 15 C -0.09 -1.60 10.20 22.48 0.23 -1.37 14 16 C 0.03 0.78 11.31 84.78 0.96 1.74 14 17 N -0.28 -10.66 11.50 -57.12 -0.66 -11.32 14 18 N -0.25 -11.86 11.43 -48.54 -0.55 -12.42 14 19 N -0.41 -23.92 8.38 -182.92 -1.53 -25.45 14 20 H 0.28 15.17 8.30 -92.71 -0.77 14.41 14 21 H 0.15 7.19 8.06 -2.91 -0.02 7.17 14 22 H 0.17 3.76 7.36 -2.91 -0.02 3.74 14 23 H 0.21 1.29 8.06 -2.91 -0.02 1.26 14 24 H 0.22 2.65 8.06 -2.91 -0.02 2.63 14 Total: -1.00 -78.30 241.29 3.55 -74.75 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.24 Total: 4.99 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.03 Total: -30.92 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -2.49 Total: -95.07 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.25 Total: 3.03 kcal Total: -78.30 3.55 -74.75 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074210614.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.683 kcal (2) G-P(sol) polarization free energy of solvation -78.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds