Wall clock time and date at job start Mon Mar 30 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48508 * 109.46842 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46943 * 299.99756 * 3 2 1 6 6 H 1.48493 * 109.47248 * 60.00425 * 3 2 1 7 7 C 1.40437 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99479 * 179.97438 * 7 2 1 9 9 C 1.39978 * 120.00533 * 0.02562 * 7 2 1 10 10 N 1.32323 * 125.11634 * 179.97438 * 9 7 2 11 11 C 1.34258 * 108.86398 * 180.02562 * 10 9 7 12 12 C 1.40085 * 133.40295 * 179.97438 * 11 10 9 13 13 C 1.39000 * 119.54454 * 180.02562 * 12 11 10 14 14 C 1.47606 * 119.92203 * 179.97438 * 13 12 11 15 15 O 1.21488 * 119.99860 * 359.97438 * 14 13 12 16 16 O 1.34728 * 119.99948 * 180.02562 * 14 13 12 17 17 C 1.40312 * 120.16285 * 359.86872 * 13 12 11 18 18 C 1.37652 * 120.46898 * 0.20004 * 17 13 12 19 19 C 1.38719 * 120.16691 * 359.86261 * 18 17 13 20 20 O 1.35074 * 133.50571 * 180.02562 * 19 18 17 21 21 H 0.97007 * 119.99809 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.22975 * 359.77329 * 12 11 10 23 23 H 0.96702 * 116.99625 * 179.97438 * 16 14 13 24 24 H 1.07997 * 119.76630 * 180.02562 * 17 13 12 25 25 H 1.08000 * 119.91505 * 179.89434 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.6995 1.3462 -0.0006 5 1 1.8807 2.3964 -1.2126 6 1 1.8808 2.3963 1.2125 7 6 2.0075 -1.2163 0.0005 8 1 3.0875 -1.2163 0.0001 9 6 1.3076 -2.4285 0.0005 10 7 1.8644 -3.6289 0.0005 11 6 0.8945 -4.5573 0.0000 12 6 0.9030 -5.9581 -0.0007 13 6 -0.3021 -6.6508 -0.0018 14 6 -0.3030 -8.1269 -0.0031 15 8 0.7488 -8.7349 -0.0038 16 8 -1.4701 -8.7998 -0.0046 17 6 -1.5179 -5.9504 0.0007 18 6 -1.5305 -4.5739 0.0000 19 6 -0.3375 -3.8659 -0.0003 20 8 -0.0379 -2.5488 -0.0005 21 1 -0.4850 0.8401 0.0004 22 1 1.8394 -6.4962 -0.0046 23 1 -1.4200 -9.7656 -0.0058 24 1 -2.4505 -6.4950 0.0003 25 1 -2.4714 -4.0438 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074211196.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:20 Heat of formation + Delta-G solvation = -99.715170 kcal Electronic energy + Delta-G solvation = -15189.521231 eV Core-core repulsion = 12325.670156 eV Total energy + Delta-G solvation = -2863.851075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.36016 -41.18430 -38.36161 -37.03785 -35.89180 -35.00796 -31.73805 -31.22739 -28.58807 -25.48245 -23.65410 -22.41769 -22.33175 -20.21139 -18.94893 -18.52506 -17.97143 -17.24762 -17.05244 -16.55405 -16.27373 -15.47549 -15.07753 -14.77091 -14.13504 -13.70231 -13.46954 -13.29818 -13.19438 -13.00624 -12.53917 -12.23177 -12.14766 -11.98274 -11.72357 -11.34365 -10.77995 -9.76544 -9.41595 -9.06090 -7.03835 -0.27604 0.16113 1.28111 1.37502 1.56028 1.59359 1.93578 2.02284 2.10499 2.36424 2.77340 3.09116 3.67370 3.92771 4.07770 4.23298 4.48640 4.61276 4.83545 4.93023 5.13497 5.25679 5.43820 5.53341 5.59565 5.83906 5.90333 6.25475 6.30576 7.02278 7.47116 7.97092 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.072117 B = 0.005790 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.164754 B = 4835.123745 C = 5213.445807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.027 3.973 3 Si 1.022 2.978 4 H -0.248 1.248 5 H -0.255 1.255 6 H -0.255 1.255 7 C -0.427 4.427 8 H 0.126 0.874 9 C 0.342 3.658 10 N -0.658 5.658 11 C 0.054 3.946 12 C -0.077 4.077 13 C -0.124 4.124 14 C 0.549 3.451 15 O -0.551 6.551 16 O -0.493 6.493 17 C -0.089 4.089 18 C -0.087 4.087 19 C -0.059 4.059 20 O -0.214 6.214 21 H 0.308 0.692 22 H 0.125 0.875 23 H 0.434 0.566 24 H 0.181 0.819 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 -4.107 -0.004 7.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.196 4.196 3 Si 0.838 3.162 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.179 1.179 7 C -0.460 4.460 8 H 0.144 0.856 9 C 0.163 3.837 10 N -0.396 5.396 11 C -0.065 4.065 12 C -0.098 4.098 13 C -0.126 4.126 14 C 0.395 3.605 15 O -0.444 6.444 16 O -0.307 6.307 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.112 4.112 20 O -0.111 6.111 21 H 0.120 0.880 22 H 0.143 0.857 23 H 0.296 0.704 24 H 0.198 0.802 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.162 -3.794 -0.005 6.406 hybrid contribution -0.168 0.085 -0.002 0.189 sum -5.331 -3.708 -0.006 6.494 Atomic orbital electron populations 1.69683 1.09656 1.33074 1.28454 1.27445 0.96021 1.05858 0.90265 0.84560 0.79083 0.72750 0.79801 1.17132 1.17871 1.17857 1.19340 0.96033 0.86202 1.44427 0.85618 1.22868 0.76477 0.94612 0.89776 1.70982 1.30663 0.97747 1.40166 1.20188 0.90081 0.95208 1.01053 1.20115 0.98160 0.89296 1.02256 1.18704 0.94036 0.89570 1.10306 1.20443 0.81151 0.88021 0.70912 1.90857 1.34417 1.70669 1.48433 1.84507 1.32680 1.28461 1.85040 1.21166 0.97757 0.91556 1.00356 1.20010 0.94080 0.93460 1.02962 1.21555 0.98269 0.83410 1.07997 1.84992 1.26501 1.22667 1.76936 0.88026 0.85734 0.70363 0.80219 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.12 11.93 21.91 0.26 -37.86 15 2 C 0.03 1.25 5.50 85.42 0.47 1.72 15 3 Si 1.02 33.34 29.56 68.60 2.03 35.37 15 4 H -0.25 -7.88 7.11 99.48 0.71 -7.17 15 5 H -0.25 -7.80 7.11 99.48 0.71 -7.09 15 6 H -0.25 -7.79 7.11 99.48 0.71 -7.08 15 7 C -0.43 -22.43 9.46 23.23 0.22 -22.21 15 8 H 0.13 6.24 7.85 -2.91 -0.02 6.22 15 9 C 0.34 19.78 7.60 85.04 0.65 20.43 15 10 N -0.66 -38.22 11.35 -302.22 -3.43 -41.65 15 11 C 0.05 2.84 7.21 39.97 0.29 3.13 15 12 C -0.08 -3.46 9.66 22.90 0.22 -3.23 15 13 C -0.12 -4.54 5.87 -20.12 -0.12 -4.66 15 14 C 0.55 17.08 8.26 70.29 0.58 17.67 15 15 O -0.55 -20.36 17.11 19.87 0.34 -20.02 15 16 O -0.49 -10.06 12.65 -56.38 -0.71 -10.78 15 17 C -0.09 -2.87 9.60 22.64 0.22 -2.65 15 18 C -0.09 -3.32 10.03 22.25 0.22 -3.10 15 19 C -0.06 -2.98 7.43 23.13 0.17 -2.81 15 20 O -0.21 -12.13 9.00 -18.12 -0.16 -12.29 15 21 H 0.31 12.89 8.29 -92.70 -0.77 12.12 15 22 H 0.12 5.61 7.63 -2.91 -0.02 5.58 15 23 H 0.43 4.26 9.11 -74.06 -0.67 3.59 15 24 H 0.18 4.17 7.58 -2.91 -0.02 4.14 15 25 H 0.15 4.88 8.06 -2.91 -0.02 4.86 15 Total: -1.00 -69.60 242.07 1.83 -67.77 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.59 Total: 15.17 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 2.92 Total: 4.29 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.17 Total: -79.51 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.54 Total: -43.09 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.37 kcal Total: -69.60 1.83 -67.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074211196.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.948 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds