Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31285 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48498 * 109.47278 * 89.99961 * 3 2 1 5 5 H 1.48507 * 109.47270 * 210.00017 * 3 2 1 6 6 H 1.48497 * 109.47158 * 329.99745 * 3 2 1 7 7 C 1.39037 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99429 * 18.32222 * 7 2 1 9 9 N 1.36958 * 120.00394 * 198.32162 * 7 2 1 10 10 C 1.36643 * 118.86216 * 31.10135 * 9 7 2 11 11 C 1.34370 * 122.36487 * 179.69428 * 10 9 7 12 12 C 1.46412 * 119.41851 * 0.57319 * 11 10 9 13 13 C 1.39729 * 121.94201 * 179.70209 * 12 11 10 14 14 F 1.35099 * 120.25484 * 0.02562 * 13 12 11 15 15 C 1.38001 * 119.48679 * 180.02562 * 13 12 11 16 16 C 1.38861 * 120.71241 * 0.02562 * 15 13 12 17 17 C 1.37776 * 120.77443 * 359.97438 * 16 15 13 18 18 C 1.39493 * 119.59185 * 0.02562 * 17 16 15 19 19 C 1.34766 * 118.86615 * 211.37521 * 9 7 2 20 20 O 1.21763 * 120.36585 * 359.97356 * 19 9 7 21 21 H 0.96998 * 120.00716 * 175.27987 * 1 2 3 22 22 H 1.07999 * 118.81663 * 0.02562 * 10 9 7 23 23 H 1.08002 * 120.29104 * 180.28770 * 11 10 9 24 24 H 1.07998 * 119.64571 * 180.02562 * 15 13 12 25 25 H 1.08003 * 119.61270 * 179.97438 * 16 15 13 26 26 H 1.07993 * 120.20665 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 1.4000 5 1 3.5445 1.4401 -0.7001 6 1 1.4444 2.6526 -0.7001 7 6 2.0080 -1.2041 0.0005 8 1 1.5090 -2.1158 -0.2931 9 7 3.3256 -1.2341 0.3734 10 6 3.7693 -0.3337 1.3004 11 6 5.0451 -0.3042 1.7213 12 6 6.0078 -1.2573 1.1660 13 6 7.3480 -1.2694 1.5610 14 9 7.7944 -0.3867 2.4811 15 6 8.2121 -2.1901 1.0040 16 6 7.7635 -3.1013 0.0571 17 6 6.4463 -3.1072 -0.3469 18 6 5.5534 -2.1864 0.2014 19 6 4.1408 -2.1469 -0.1908 20 8 3.7093 -2.9302 -1.0172 21 1 -0.4851 -0.8371 -0.0691 22 1 3.0683 0.3764 1.7136 23 1 5.3587 0.4194 2.4593 24 1 9.2484 -2.2020 1.3078 25 1 8.4552 -3.8138 -0.3675 26 1 6.1074 -3.8198 -1.0843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076777878.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = -37.870704 kcal Electronic energy + Delta-G solvation = -15725.583618 eV Core-core repulsion = 12876.787110 eV Total energy + Delta-G solvation = -2848.796508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.52142 -40.41415 -37.69672 -36.10603 -33.45866 -31.65305 -30.32133 -28.67843 -25.73572 -23.55192 -22.60760 -21.04909 -19.30601 -17.64317 -17.44694 -16.65003 -15.67019 -15.37995 -15.25463 -14.80126 -14.71513 -14.04660 -13.78565 -13.04968 -12.85990 -12.66486 -12.31895 -11.80423 -11.34126 -11.22861 -11.12186 -10.74143 -10.30035 -9.93790 -9.57517 -9.16424 -8.77520 -8.54037 -7.45811 -7.08817 -4.54896 1.16619 1.20758 2.65436 2.90389 3.09914 3.25259 3.40513 3.81161 3.95096 4.34375 4.52846 4.81763 5.00317 5.07423 5.25465 5.43168 5.52029 5.68522 6.11017 6.20543 6.33035 6.38653 6.56929 6.80442 6.90265 7.19137 7.46967 7.55607 7.77971 8.47715 8.61883 9.16079 10.04845 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.033834 B = 0.009863 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.383207 B = 2838.257901 C = 3478.289667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.027 3.973 3 Si 1.045 2.955 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.414 4.414 8 H 0.113 0.887 9 N -0.338 5.338 10 C 0.095 3.905 11 C -0.255 4.255 12 C -0.020 4.020 13 C 0.074 3.926 14 F -0.141 7.141 15 C -0.130 4.130 16 C -0.140 4.140 17 C -0.054 4.054 18 C -0.139 4.139 19 C 0.495 3.505 20 O -0.544 6.544 21 H 0.286 0.714 22 H 0.152 0.848 23 H 0.138 0.862 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 0.151 3.079 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.187 4.187 3 Si 0.870 3.130 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.130 0.870 9 N -0.034 5.034 10 C -0.034 4.034 11 C -0.279 4.279 12 C -0.024 4.024 13 C 0.055 3.945 14 F -0.120 7.120 15 C -0.150 4.150 16 C -0.159 4.159 17 C -0.073 4.073 18 C -0.144 4.144 19 C 0.294 3.706 20 O -0.426 6.426 21 H 0.098 0.902 22 H 0.169 0.831 23 H 0.156 0.844 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.963 1.297 2.613 11.344 hybrid contribution 0.163 -1.443 0.164 1.462 sum 11.126 -0.146 2.776 11.468 Atomic orbital electron populations 1.70712 1.06190 1.32382 1.36800 1.26725 0.96461 1.02128 0.93354 0.83977 0.76000 0.74890 0.78149 1.19682 1.19171 1.19836 1.21141 0.83640 0.99120 1.50262 0.86963 1.41467 1.10279 1.24206 1.27399 1.21705 0.96530 0.94608 0.90538 1.20919 0.91977 1.05821 1.09155 1.18954 0.91937 0.95817 0.95683 1.17337 0.92021 0.92239 0.92912 1.91433 1.89460 1.67052 1.64010 1.21028 0.99442 0.95969 0.98562 1.20721 0.95611 1.00246 0.99343 1.21023 0.92210 0.96399 0.97686 1.19819 0.94660 0.99401 1.00514 1.18059 0.85249 0.84212 0.83081 1.90715 1.76751 1.41157 1.34016 0.90233 0.83062 0.84377 0.85272 0.85348 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.18 13.68 55.50 0.76 -21.42 15 2 C 0.03 0.69 5.29 -17.49 -0.09 0.60 15 3 Si 1.04 22.36 25.07 -169.99 -4.26 18.10 15 4 H -0.27 -5.12 6.50 56.52 0.37 -4.75 15 5 H -0.27 -5.73 7.09 56.52 0.40 -5.32 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.41 -11.18 9.28 -14.97 -0.14 -11.32 15 8 H 0.11 3.30 7.72 -52.48 -0.41 2.90 15 9 N -0.34 -8.46 2.53 -62.90 -0.16 -8.61 15 10 C 0.10 2.07 7.41 -16.77 -0.12 1.94 15 11 C -0.25 -4.97 9.82 -37.66 -0.37 -5.34 15 12 C -0.02 -0.40 5.89 -104.84 -0.62 -1.01 15 13 C 0.07 1.27 7.30 -39.11 -0.29 0.98 15 14 F -0.14 -2.31 16.80 2.25 0.04 -2.27 15 15 C -0.13 -1.88 10.00 -39.44 -0.39 -2.28 15 16 C -0.14 -2.01 10.01 -39.52 -0.40 -2.41 15 17 C -0.05 -0.96 9.66 -39.28 -0.38 -1.34 15 18 C -0.14 -2.93 5.90 -104.82 -0.62 -3.55 15 19 C 0.50 12.38 7.57 -12.87 -0.10 12.28 15 20 O -0.54 -14.91 16.26 5.13 0.08 -14.83 15 21 H 0.29 7.52 8.73 -40.82 -0.36 7.17 15 22 H 0.15 3.10 4.40 -52.49 -0.23 2.87 15 23 H 0.14 2.30 7.88 -52.49 -0.41 1.88 15 24 H 0.13 1.46 8.06 -52.49 -0.42 1.03 15 25 H 0.13 1.39 8.06 -52.48 -0.42 0.96 15 26 H 0.13 2.28 7.79 -52.49 -0.41 1.87 15 LS Contribution 235.78 15.07 3.55 3.55 Total: -1.00 -28.67 235.78 -4.99 -33.67 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -1.49 Total: 3.26 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.51 Total: -11.44 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.60 Total: -30.04 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.26 Total: 18.10 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.67 -4.99 -33.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076777878.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.205 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds