Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31285 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48498 * 109.47278 * 89.99961 * 3 2 1 5 5 H 1.48507 * 109.47270 * 210.00017 * 3 2 1 6 6 H 1.48497 * 109.47158 * 329.99745 * 3 2 1 7 7 C 1.39037 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99429 * 18.32222 * 7 2 1 9 9 N 1.36958 * 120.00394 * 198.32162 * 7 2 1 10 10 C 1.36643 * 118.86216 * 31.10135 * 9 7 2 11 11 C 1.34370 * 122.36487 * 179.69428 * 10 9 7 12 12 C 1.46412 * 119.41851 * 0.57319 * 11 10 9 13 13 C 1.39729 * 121.94201 * 179.70209 * 12 11 10 14 14 F 1.35099 * 120.25484 * 0.02562 * 13 12 11 15 15 C 1.38001 * 119.48679 * 180.02562 * 13 12 11 16 16 C 1.38861 * 120.71241 * 0.02562 * 15 13 12 17 17 C 1.37776 * 120.77443 * 359.97438 * 16 15 13 18 18 C 1.39493 * 119.59185 * 0.02562 * 17 16 15 19 19 C 1.34766 * 118.86615 * 211.37521 * 9 7 2 20 20 O 1.21763 * 120.36585 * 359.97356 * 19 9 7 21 21 H 0.96998 * 120.00716 * 175.27987 * 1 2 3 22 22 H 1.07999 * 118.81663 * 0.02562 * 10 9 7 23 23 H 1.08002 * 120.29104 * 180.28770 * 11 10 9 24 24 H 1.07998 * 119.64571 * 180.02562 * 15 13 12 25 25 H 1.08003 * 119.61270 * 179.97438 * 16 15 13 26 26 H 1.07993 * 120.20665 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 1.4000 5 1 3.5445 1.4401 -0.7001 6 1 1.4444 2.6526 -0.7001 7 6 2.0080 -1.2041 0.0005 8 1 1.5090 -2.1158 -0.2931 9 7 3.3256 -1.2341 0.3734 10 6 3.7693 -0.3337 1.3004 11 6 5.0451 -0.3042 1.7213 12 6 6.0078 -1.2573 1.1660 13 6 7.3480 -1.2694 1.5610 14 9 7.7944 -0.3867 2.4811 15 6 8.2121 -2.1901 1.0040 16 6 7.7635 -3.1013 0.0571 17 6 6.4463 -3.1072 -0.3469 18 6 5.5534 -2.1864 0.2014 19 6 4.1408 -2.1469 -0.1908 20 8 3.7093 -2.9302 -1.0172 21 1 -0.4851 -0.8371 -0.0691 22 1 3.0683 0.3764 1.7136 23 1 5.3587 0.4194 2.4593 24 1 9.2484 -2.2020 1.3078 25 1 8.4552 -3.8138 -0.3675 26 1 6.1074 -3.8198 -1.0843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076777878.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = -56.248369 kcal Electronic energy + Delta-G solvation = -15726.380534 eV Core-core repulsion = 12876.787110 eV Total energy + Delta-G solvation = -2849.593423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83008 -42.11798 -39.17867 -37.95974 -35.24740 -33.32700 -31.76895 -30.24580 -27.53546 -25.06699 -24.24000 -22.59598 -21.05323 -19.27210 -19.01434 -18.27960 -17.22708 -16.95718 -16.73664 -16.40581 -16.14216 -15.73728 -15.42263 -14.79435 -14.33744 -14.21625 -13.77459 -13.28450 -13.13294 -12.65242 -12.58250 -12.39156 -12.03963 -11.72710 -11.28817 -10.87408 -10.52667 -9.94777 -9.41493 -8.76882 -6.60699 -0.28060 -0.23467 1.05016 1.21319 1.39572 1.59985 1.86901 2.08020 2.24814 2.61612 3.04106 3.14483 3.56093 3.59764 3.92265 3.96459 4.18173 4.25730 4.71986 4.80348 4.85260 5.04633 5.19520 5.30924 5.35819 5.47195 5.63760 5.83293 5.94102 6.56956 6.75110 7.32806 8.03824 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.033834 B = 0.009863 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.383207 B = 2838.257901 C = 3478.289667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C -0.004 4.004 3 Si 1.080 2.920 4 H -0.221 1.221 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.443 4.443 8 H 0.060 0.940 9 N -0.359 5.359 10 C 0.069 3.931 11 C -0.220 4.220 12 C -0.046 4.046 13 C 0.080 3.920 14 F -0.132 7.132 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.075 4.075 18 C -0.152 4.152 19 C 0.474 3.526 20 O -0.597 6.597 21 H 0.272 0.728 22 H 0.163 0.837 23 H 0.177 0.823 24 H 0.179 0.821 25 H 0.179 0.821 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.653 1.250 4.760 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.211 4.211 3 Si 0.897 3.103 4 H -0.145 1.145 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.078 0.922 9 N -0.058 5.058 10 C -0.056 4.056 11 C -0.243 4.243 12 C -0.049 4.049 13 C 0.060 3.940 14 F -0.111 7.111 15 C -0.128 4.128 16 C -0.120 4.120 17 C -0.094 4.094 18 C -0.156 4.156 19 C 0.274 3.726 20 O -0.484 6.484 21 H 0.082 0.918 22 H 0.179 0.821 23 H 0.194 0.806 24 H 0.196 0.804 25 H 0.196 0.804 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.048 2.413 4.360 16.804 hybrid contribution -0.965 -1.973 -0.282 2.215 sum 15.083 0.440 4.078 15.631 Atomic orbital electron populations 1.70807 1.06948 1.31444 1.39804 1.28022 0.96372 1.04921 0.91815 0.83621 0.74548 0.71156 0.80928 1.14484 1.19613 1.19411 1.20686 0.85374 0.97887 1.53088 0.92191 1.41355 1.09379 1.25819 1.29240 1.22010 0.97787 0.94605 0.91172 1.21516 0.90801 1.04744 1.07287 1.19165 0.93660 0.95963 0.96122 1.17416 0.91041 0.92712 0.92820 1.91469 1.89111 1.66865 1.63647 1.21616 1.01221 0.93520 0.96422 1.21296 0.94250 0.99491 0.96993 1.21243 0.93595 0.96211 0.98368 1.19858 0.92741 1.01207 1.01839 1.18812 0.87042 0.83853 0.82905 1.90648 1.77972 1.43255 1.36562 0.91772 0.82064 0.80573 0.80398 0.80373 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.85 13.68 21.67 0.30 -48.55 15 2 C 0.00 -0.23 5.29 84.97 0.45 0.22 15 3 Si 1.08 45.16 25.07 68.60 1.72 46.88 15 4 H -0.22 -7.48 6.50 99.48 0.65 -6.84 15 5 H -0.27 -11.38 7.09 99.48 0.70 -10.68 15 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 7 C -0.44 -26.00 9.28 84.08 0.78 -25.22 15 8 H 0.06 4.00 7.72 -2.91 -0.02 3.97 15 9 N -0.36 -18.87 2.53 -471.10 -1.19 -20.06 15 10 C 0.07 2.95 7.41 83.06 0.62 3.56 15 11 C -0.22 -7.94 9.82 23.52 0.23 -7.71 15 12 C -0.05 -1.66 5.89 -20.01 -0.12 -1.78 15 13 C 0.08 2.27 7.30 22.57 0.16 2.43 15 14 F -0.13 -3.52 16.80 44.97 0.76 -2.77 15 15 C -0.11 -2.34 10.00 22.36 0.22 -2.12 15 16 C -0.10 -2.29 10.01 22.31 0.22 -2.07 15 17 C -0.07 -2.47 9.66 22.46 0.22 -2.26 15 18 C -0.15 -6.31 5.90 -19.99 -0.12 -6.43 15 19 C 0.47 24.93 7.57 86.44 0.65 25.59 15 20 O -0.60 -35.49 16.26 -4.55 -0.07 -35.56 15 21 H 0.27 15.67 8.73 -92.71 -0.81 14.86 15 22 H 0.16 6.41 4.40 -2.91 -0.01 6.39 15 23 H 0.18 4.94 7.88 -2.91 -0.02 4.92 15 24 H 0.18 2.31 8.06 -2.91 -0.02 2.29 15 25 H 0.18 2.38 8.06 -2.91 -0.02 2.36 15 26 H 0.13 4.38 7.79 -2.91 -0.02 4.36 15 Total: -1.00 -70.40 235.78 5.95 -64.45 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.12 Total: 11.40 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 3.32 Total: -15.79 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.90 Total: -68.62 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.07 Total: -35.56 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.76 Total: -2.77 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.72 Total: 46.88 kcal Total: -70.40 5.95 -64.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076777878.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.202 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds