Wall clock time and date at job start Mon Mar 30 2020 03:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31240 * 1 3 3 Si 1.86794 * 120.00096 * 2 1 4 4 H 1.48502 * 109.47102 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47303 * 119.99710 * 3 2 1 6 6 H 1.48504 * 109.47155 * 239.99887 * 3 2 1 7 7 C 1.39155 * 120.00026 * 179.72673 * 2 1 3 8 8 H 1.07994 * 120.00472 * 141.52035 * 7 2 1 9 9 N 1.36822 * 119.99392 * 321.51778 * 7 2 1 10 10 C 1.34436 * 119.51941 * 316.84533 * 9 7 2 11 11 O 1.21902 * 119.15084 * 0.02562 * 10 9 7 12 12 C 1.40929 * 121.69463 * 179.72617 * 10 9 7 13 13 C 1.35747 * 120.25553 * 0.57282 * 12 10 9 14 14 C 1.46424 * 118.53251 * 359.71810 * 13 12 10 15 15 C 1.39866 * 121.11344 * 180.02562 * 14 13 12 16 16 C 1.37857 * 119.58141 * 180.02562 * 15 14 13 17 17 F 1.35101 * 119.80556 * 179.97438 * 16 15 14 18 18 C 1.39039 * 120.38437 * 359.96073 * 16 15 14 19 19 C 1.37808 * 120.67445 * 0.02562 * 18 16 15 20 20 C 1.38058 * 119.51366 * 137.12698 * 9 7 2 21 21 H 0.97002 * 119.99740 * 174.34126 * 1 2 3 22 22 H 1.08004 * 119.87116 * 180.27080 * 12 10 9 23 23 H 1.08003 * 120.73318 * 179.73847 * 13 12 10 24 24 H 1.07991 * 120.20854 * 359.97438 * 15 14 13 25 25 H 1.07999 * 119.65838 * 180.02562 * 18 16 15 26 26 H 1.07993 * 120.03853 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 1.2814 2.7464 -0.0006 5 1 3.1001 1.6964 1.2125 6 1 3.1002 1.6963 -1.2125 7 6 2.0082 -1.2051 0.0057 8 1 2.9122 -1.3095 -0.5757 9 7 1.5468 -2.2577 0.7482 10 6 1.0959 -2.0410 1.9960 11 8 1.1066 -0.9068 2.4426 12 6 0.6054 -3.0904 2.7987 13 6 0.5883 -4.3627 2.3258 14 6 1.0827 -4.6117 0.9702 15 6 1.0892 -5.9013 0.4288 16 6 1.5623 -6.0999 -0.8507 17 9 1.5712 -7.3437 -1.3779 18 6 2.0300 -5.0274 -1.6019 19 6 2.0292 -3.7513 -1.0817 20 6 1.5567 -3.5278 0.2070 21 1 -0.4850 -0.8360 -0.0828 22 1 0.2462 -2.8822 3.7957 23 1 0.2180 -5.1734 2.9359 24 1 0.7268 -6.7364 1.0098 25 1 2.3976 -5.1963 -2.6033 26 1 2.3945 -2.9257 -1.6744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077008155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:17 Heat of formation + Delta-G solvation = -52.133760 kcal Electronic energy + Delta-G solvation = -15787.746056 eV Core-core repulsion = 12938.331056 eV Total energy + Delta-G solvation = -2849.415001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.74121 -42.16037 -39.23716 -36.56097 -35.59862 -33.92192 -31.22935 -29.88529 -27.32687 -24.87452 -23.93505 -23.33500 -20.48066 -19.55245 -18.92053 -17.78172 -16.89494 -16.77165 -16.39188 -16.33475 -16.05293 -15.60178 -15.00342 -14.80755 -14.12954 -13.99844 -13.62449 -13.48305 -13.23931 -12.79578 -12.36510 -12.02272 -11.89499 -11.53943 -11.24609 -10.89027 -10.36436 -9.56174 -9.21051 -8.70587 -6.42300 -0.44073 0.14925 0.95516 1.43205 1.57204 1.75236 2.13802 2.22995 2.64665 2.78746 3.22328 3.28891 3.66830 3.75198 3.99663 4.08287 4.31808 4.34931 4.74798 4.89337 4.97300 5.09701 5.18299 5.27376 5.48872 5.53099 5.73677 5.90534 6.46363 6.65097 7.02259 7.65519 8.17458 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.009239 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.135712 B = 3030.049982 C = 3649.405654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.035 3.965 3 Si 1.111 2.889 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.495 4.495 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.451 3.549 11 O -0.603 6.603 12 C -0.238 4.238 13 C -0.020 4.020 14 C -0.141 4.141 15 C -0.079 4.079 16 C 0.039 3.961 17 F -0.142 7.142 18 C -0.102 4.102 19 C -0.130 4.130 20 C 0.128 3.872 21 H 0.262 0.738 22 H 0.154 0.846 23 H 0.189 0.811 24 H 0.176 0.824 25 H 0.161 0.839 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -11.921 -1.453 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.179 4.179 3 Si 0.930 3.070 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.619 4.619 8 H 0.117 0.883 9 N -0.048 5.048 10 C 0.254 3.746 11 O -0.490 6.490 12 C -0.260 4.260 13 C -0.041 4.041 14 C -0.145 4.145 15 C -0.098 4.098 16 C 0.019 3.981 17 F -0.121 7.121 18 C -0.122 4.122 19 C -0.150 4.150 20 C 0.021 3.979 21 H 0.072 0.928 22 H 0.172 0.828 23 H 0.206 0.794 24 H 0.194 0.806 25 H 0.178 0.822 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.106 -9.611 -1.138 9.905 hybrid contribution 0.059 -1.496 -0.052 1.498 sum 2.165 -11.107 -1.190 11.378 Atomic orbital electron populations 1.70711 1.09472 1.30827 1.34761 1.27729 0.95046 1.06049 0.89106 0.83079 0.74939 0.70788 0.78191 1.20465 1.21372 1.16672 1.20306 1.13272 0.93294 1.35018 0.88336 1.41468 1.46265 1.05956 1.11128 1.18008 0.83806 0.90919 0.81889 1.90714 1.60064 1.25867 1.72347 1.22178 1.08342 0.93132 1.02308 1.22777 0.92257 0.96777 0.92281 1.18655 1.07460 0.92300 0.96042 1.21159 0.98500 0.96187 0.93908 1.17412 1.07039 0.79804 0.93851 1.91464 1.95089 1.38909 1.86653 1.21212 0.99397 0.90330 1.01253 1.20751 1.02705 0.97737 0.93797 1.19117 0.98421 0.85921 0.94392 0.92838 0.82830 0.79374 0.80630 0.82156 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.00 12.98 21.69 0.28 -49.72 15 2 C 0.03 1.95 3.59 85.00 0.31 2.26 15 3 Si 1.11 50.41 30.05 68.60 2.06 52.47 15 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 15 6 H -0.24 -9.36 7.11 99.48 0.71 -8.65 15 7 C -0.49 -27.23 7.76 84.13 0.65 -26.57 15 8 H 0.10 5.15 7.24 -2.91 -0.02 5.13 15 9 N -0.35 -18.22 2.50 -468.76 -1.17 -19.39 15 10 C 0.45 24.23 6.91 84.95 0.59 24.82 15 11 O -0.60 -37.52 15.25 -5.00 -0.08 -37.60 15 12 C -0.24 -9.73 9.90 22.35 0.22 -9.51 15 13 C -0.02 -0.62 10.10 23.83 0.24 -0.38 15 14 C -0.14 -4.90 5.87 -20.13 -0.12 -5.02 15 15 C -0.08 -2.13 9.81 22.57 0.22 -1.91 15 16 C 0.04 1.10 7.29 22.37 0.16 1.27 15 17 F -0.14 -3.74 17.26 44.97 0.78 -2.97 15 18 C -0.10 -3.03 9.99 22.36 0.22 -2.81 15 19 C -0.13 -4.89 9.26 22.37 0.21 -4.68 15 20 C 0.13 5.51 6.49 38.99 0.25 5.76 15 21 H 0.26 16.11 8.47 -92.71 -0.78 15.33 15 22 H 0.15 5.56 8.06 -2.91 -0.02 5.53 15 23 H 0.19 3.70 8.06 -2.91 -0.02 3.67 15 24 H 0.18 3.28 8.06 -2.92 -0.02 3.25 15 25 H 0.16 3.73 8.06 -2.91 -0.02 3.71 15 26 H 0.13 5.25 6.59 -2.91 -0.02 5.23 15 Total: -1.00 -71.44 240.87 6.03 -65.41 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.20 Total: 8.57 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 2.96 Total: -16.78 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.89 Total: -69.11 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.08 Total: -37.60 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.06 Total: 52.47 kcal Total: -71.44 6.03 -65.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077008155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.281 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds