Wall clock time and date at job start Mon Mar 30 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86803 * 119.99584 * 2 1 4 4 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47002 * 120.00352 * 3 2 1 6 6 H 1.48501 * 109.47300 * 240.00615 * 3 2 1 7 7 C 1.39711 * 120.00632 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99605 * 3.01458 * 7 2 1 9 9 C 1.41134 * 120.00093 * 183.01887 * 7 2 1 10 10 C 1.37691 * 122.85955 * 186.35800 * 9 7 2 11 11 S 1.70988 * 108.86036 * 179.86628 * 10 9 7 12 12 C 1.75882 * 90.81996 * 0.32963 * 11 10 9 13 13 Br 1.89105 * 124.99729 * 179.83881 * 12 11 10 14 14 N 1.28910 * 110.01135 * 359.80462 * 12 11 10 15 15 H 0.97009 * 119.99555 * 174.83382 * 1 2 3 16 16 H 1.08002 * 125.56938 * 0.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 1.2791 2.7465 0.0006 5 1 3.0979 1.6965 1.2124 6 1 3.0978 1.6967 -1.2126 7 6 2.0090 -1.2099 -0.0005 8 1 1.4701 -2.1445 -0.0501 9 6 3.4188 -1.2106 0.0638 10 6 4.1718 -2.3566 -0.0608 11 16 5.8269 -1.9473 0.0679 12 6 5.4161 -0.2520 0.2932 13 35 6.6675 1.1423 0.5502 14 7 4.1366 -0.0995 0.2567 15 1 -0.4850 -0.8367 -0.0757 16 1 3.7809 -3.3512 -0.2171 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082381367.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:33 Heat of formation + Delta-G solvation = 3.585558 kcal Electronic energy + Delta-G solvation = -7647.404694 eV Core-core repulsion = 5878.092316 eV Total energy + Delta-G solvation = -1769.312378 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 232.920 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.29441 -35.54354 -33.06472 -30.83983 -28.01731 -24.42212 -21.39652 -20.39737 -18.19019 -16.98400 -15.65210 -15.39769 -15.03621 -14.23040 -14.06240 -12.91131 -12.73678 -12.12490 -12.07160 -11.81991 -11.54374 -11.25997 -10.32103 -10.08341 -9.68076 -9.37238 -6.72671 -0.23837 -0.21607 0.71335 1.28990 1.36033 1.51601 1.94130 2.00957 2.33634 3.10081 4.03564 4.81851 4.95687 5.38741 5.85524 5.96924 6.56003 6.86303 7.97161 Molecular weight = 232.92amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.014692 C = 0.010753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.780220 B = 1905.276822 C = 2603.352650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.015 3.985 3 Si 1.149 2.851 4 H -0.310 1.310 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.190 3.810 10 C -0.444 4.444 11 S 0.200 5.800 12 C 0.033 3.967 13 Br 0.060 6.940 14 N -0.490 5.490 15 H 0.279 0.721 16 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 1.752 0.748 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.200 4.200 3 Si 0.977 3.023 4 H -0.241 1.241 5 H -0.194 1.194 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.584 4.584 11 S 0.446 5.554 12 C -0.323 4.323 13 Br 0.140 6.860 14 N -0.213 5.213 15 H 0.090 0.910 16 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 15.287 3.767 0.935 15.773 hybrid contribution -1.757 -2.437 -0.202 3.011 sum 13.530 1.331 0.733 13.615 Atomic orbital electron populations 1.70747 1.08150 1.32384 1.35537 1.28238 0.95805 1.07108 0.88811 0.82141 0.71350 0.69093 0.79717 1.24059 1.19402 1.21146 1.20033 0.89915 0.95845 1.48732 0.91625 1.18129 0.94887 0.85432 0.94953 1.25801 0.96681 1.03118 1.32836 1.82337 1.05415 0.98183 1.69439 1.29329 0.94911 0.98506 1.09512 1.96666 1.48461 1.45164 1.95718 1.66045 1.04835 1.31675 1.18732 0.91039 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.48 13.67 21.79 0.30 -48.18 13 2 C 0.02 0.86 5.51 85.17 0.47 1.33 13 3 Si 1.15 56.84 25.69 68.60 1.76 58.60 13 4 H -0.31 -14.86 7.11 99.48 0.71 -14.15 13 5 H -0.27 -12.94 6.71 99.48 0.67 -12.27 13 6 H -0.28 -13.83 7.11 99.48 0.71 -13.13 13 7 C -0.51 -29.14 9.67 23.34 0.23 -28.92 13 8 H 0.07 3.85 8.05 -2.91 -0.02 3.82 13 9 C 0.19 9.88 6.26 39.44 0.25 10.13 13 10 C -0.44 -19.99 10.98 67.69 0.74 -19.24 13 11 S 0.20 7.14 23.17 -56.49 -1.31 5.83 13 12 C 0.03 1.32 8.10 130.67 1.06 2.38 13 13 Br 0.06 1.84 34.13 -20.37 -0.70 1.15 13 14 N -0.49 -23.98 5.31 -187.33 -0.99 -24.97 13 15 H 0.28 15.57 8.73 -92.70 -0.81 14.76 13 16 H 0.16 6.77 8.06 -2.91 -0.02 6.75 13 Total: -1.00 -59.15 188.26 3.03 -56.12 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: 1.23 Total: -14.21 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.74 Total: -34.33 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -0.70 Total: -73.15 kcal Atomic # 14 Polarization: 56.84 SS G_CDS: 1.76 Total: 58.60 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -1.31 Total: 5.83 kcal Atomic # 35 Polarization: 1.84 SS G_CDS: -0.70 Total: 1.15 kcal Total: -59.15 3.03 -56.12 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082381367.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.705 kcal (2) G-P(sol) polarization free energy of solvation -59.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds