Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86797 * 120.00468 * 2 1 4 4 H 1.48497 * 109.47259 * 270.00187 * 3 2 1 5 5 H 1.48511 * 109.46690 * 29.99840 * 3 2 1 6 6 H 1.48496 * 109.47297 * 149.99430 * 3 2 1 7 7 C 1.40360 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.41687 * 119.99985 * 0.02562 * 7 2 1 10 10 O 1.21835 * 120.00097 * 359.97438 * 9 7 2 11 11 C 1.47561 * 119.99812 * 179.97438 * 9 7 2 12 12 C 1.40088 * 120.01069 * 0.02562 * 11 9 7 13 13 C 1.36555 * 120.18474 * 180.02562 * 12 11 9 14 14 C 1.39103 * 120.14287 * 359.97438 * 13 12 11 15 15 N 1.38824 * 133.19248 * 180.02562 * 14 13 12 16 16 H 0.97004 * 126.16664 * 359.93533 * 15 14 13 17 17 C 1.34732 * 107.66215 * 179.97438 * 15 14 13 18 18 O 1.21578 * 125.23855 * 179.97438 * 17 15 14 19 19 O 1.34248 * 109.52525 * 359.97438 * 17 15 14 20 20 C 1.35568 * 109.04050 * 359.97438 * 19 17 15 21 21 C 1.38071 * 132.99987 * 180.02562 * 20 19 17 22 22 H 0.97007 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.91187 * 0.02562 * 12 11 9 24 24 H 1.08003 * 119.92946 * 179.70113 * 13 12 11 25 25 H 1.08003 * 120.17001 * 0.02747 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0463 -1.4000 5 1 1.4367 2.6526 0.7001 6 1 3.5368 1.4400 0.7001 7 6 2.0070 -1.2156 0.0005 8 1 3.0870 -1.2156 0.0001 9 6 1.2985 -2.4426 0.0005 10 8 0.0801 -2.4426 0.0005 11 6 2.0362 -3.7205 0.0005 12 6 3.4371 -3.7208 0.0011 13 6 4.1235 -4.9013 0.0006 14 6 3.4346 -6.1098 0.0000 15 7 3.8433 -7.4365 -0.0001 16 1 4.7603 -7.7530 -0.0007 17 6 2.7368 -8.2052 -0.0001 18 8 2.7272 -9.4209 -0.0007 19 8 1.6464 -7.4220 0.0005 20 6 2.0349 -6.1231 0.0016 21 6 1.3372 -4.9317 0.0030 22 1 -0.4850 0.8401 0.0004 23 1 3.9759 -2.7848 0.0019 24 1 5.2035 -4.8968 -0.0039 25 1 0.2571 -4.9351 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082381898.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = -62.695512 kcal Electronic energy + Delta-G solvation = -15224.159010 eV Core-core repulsion = 12361.913228 eV Total energy + Delta-G solvation = -2862.245782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.02443 -38.54085 -37.39993 -36.26586 -34.85190 -32.85741 -30.37221 -29.45846 -26.74723 -23.48914 -23.06585 -22.81831 -20.17295 -18.36758 -17.97096 -17.15466 -16.22589 -16.20263 -15.59424 -14.86827 -14.29617 -13.87550 -13.65227 -13.25014 -12.90987 -12.65571 -12.32865 -12.10093 -11.48520 -11.20986 -11.17448 -10.92359 -10.48819 -10.43005 -10.26373 -9.11918 -8.52860 -7.79995 -7.69587 -6.48344 -5.08963 1.26925 1.50712 2.43819 2.58177 2.95550 3.04194 3.06963 3.12801 3.65460 3.88378 4.40485 4.57279 5.10216 5.28950 5.45511 5.59200 5.74929 5.79736 6.16862 6.27319 6.56827 6.62866 6.92339 6.97069 7.07669 7.39986 7.79452 7.83875 8.60924 8.62551 10.12608 10.33849 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.062248 B = 0.005935 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.708974 B = 4716.472180 C = 5156.338969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.384 3.616 10 O -0.537 6.537 11 C -0.083 4.083 12 C -0.073 4.073 13 C -0.112 4.112 14 C 0.047 3.953 15 N -0.645 5.645 16 H 0.438 0.562 17 C 0.635 3.365 18 O -0.506 6.506 19 O -0.237 6.237 20 C 0.022 3.978 21 C -0.056 4.056 22 H 0.277 0.723 23 H 0.148 0.852 24 H 0.129 0.871 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -4.257 -0.001 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.147 4.147 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.540 4.540 8 H 0.096 0.904 9 C 0.280 3.720 10 O -0.427 6.427 11 C -0.086 4.086 12 C -0.091 4.091 13 C -0.133 4.133 14 C -0.051 4.051 15 N -0.301 5.301 16 H 0.280 0.720 17 C 0.389 3.611 18 O -0.391 6.391 19 O -0.142 6.142 20 C -0.024 4.024 21 C -0.075 4.075 22 H 0.088 0.912 23 H 0.165 0.835 24 H 0.147 0.853 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.208 -4.985 0.003 9.603 hybrid contribution 1.163 0.433 -0.008 1.241 sum 9.371 -4.552 -0.005 10.418 Atomic orbital electron populations 1.69942 1.07626 1.28511 1.29558 1.26025 0.94701 1.01182 0.92781 0.86317 0.80416 0.80653 0.79309 1.19283 1.20071 1.18395 1.20905 0.95024 0.91354 1.46706 0.90429 1.18004 0.88563 0.85262 0.80155 1.90552 1.14822 1.88053 1.49267 1.21874 0.94087 0.96617 0.95976 1.21239 0.94020 0.97433 0.96449 1.19807 0.99666 0.88640 1.05214 1.18591 0.93159 0.85593 1.07771 1.43334 1.10203 1.05267 1.71318 0.71967 1.18544 0.78721 0.85578 0.78267 1.91137 1.83926 1.07055 1.56958 1.84983 1.32769 1.16200 1.80231 1.19031 0.91237 0.83047 1.09089 1.20338 1.01426 0.86522 0.99206 0.91180 0.83459 0.85266 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.64 11.73 55.57 0.65 -18.99 15 2 C 0.08 1.92 5.50 -17.31 -0.10 1.83 15 3 Si 0.91 17.68 29.56 -169.99 -5.03 12.66 15 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 15 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 7 C -0.51 -12.63 8.85 -37.47 -0.33 -12.96 15 8 H 0.08 1.68 6.00 -52.49 -0.31 1.36 15 9 C 0.38 9.91 6.90 -34.47 -0.24 9.68 15 10 O -0.54 -15.97 14.88 5.07 0.08 -15.90 15 11 C -0.08 -1.73 5.89 -104.80 -0.62 -2.35 15 12 C -0.07 -1.21 9.38 -39.50 -0.37 -1.58 15 13 C -0.11 -1.55 10.00 -39.87 -0.40 -1.95 15 14 C 0.05 0.71 7.26 -83.72 -0.61 0.10 15 15 N -0.64 -8.47 6.18 -14.31 -0.09 -8.56 15 16 H 0.44 4.05 8.96 -40.82 -0.37 3.69 15 17 C 0.63 10.52 9.43 54.03 0.51 11.03 15 18 O -0.51 -9.39 18.05 -18.99 -0.34 -9.74 15 19 O -0.24 -4.26 10.73 -22.07 -0.24 -4.50 15 20 C 0.02 0.39 7.35 -38.99 -0.29 0.10 15 21 C -0.06 -1.10 9.61 -39.04 -0.38 -1.48 15 22 H 0.28 6.69 8.29 -40.82 -0.34 6.35 15 23 H 0.15 2.26 6.18 -52.49 -0.32 1.93 15 24 H 0.13 1.29 8.06 -52.48 -0.42 0.87 15 25 H 0.14 2.96 7.65 -52.48 -0.40 2.56 15 LS Contribution 237.76 15.07 3.58 3.58 Total: -1.00 -31.17 237.76 -5.16 -36.33 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -0.96 Total: 2.69 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.81 Total: 2.42 kcal Atomic # 7 Polarization: -28.11 SS G_CDS: 0.56 Total: -27.55 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.50 Total: -30.13 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.17 -5.16 -36.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082381898.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.368 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds