Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86797 * 120.00468 * 2 1 4 4 H 1.48497 * 109.47259 * 270.00187 * 3 2 1 5 5 H 1.48511 * 109.46690 * 29.99840 * 3 2 1 6 6 H 1.48496 * 109.47297 * 149.99430 * 3 2 1 7 7 C 1.40360 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.41687 * 119.99985 * 0.02562 * 7 2 1 10 10 O 1.21835 * 120.00097 * 359.97438 * 9 7 2 11 11 C 1.47561 * 119.99812 * 179.97438 * 9 7 2 12 12 C 1.40088 * 120.01069 * 0.02562 * 11 9 7 13 13 C 1.36555 * 120.18474 * 180.02562 * 12 11 9 14 14 C 1.39103 * 120.14287 * 359.97438 * 13 12 11 15 15 N 1.38824 * 133.19248 * 180.02562 * 14 13 12 16 16 H 0.97004 * 126.16664 * 359.93533 * 15 14 13 17 17 C 1.34732 * 107.66215 * 179.97438 * 15 14 13 18 18 O 1.21578 * 125.23855 * 179.97438 * 17 15 14 19 19 O 1.34248 * 109.52525 * 359.97438 * 17 15 14 20 20 C 1.35568 * 109.04050 * 359.97438 * 19 17 15 21 21 C 1.38071 * 132.99987 * 180.02562 * 20 19 17 22 22 H 0.97007 * 119.99959 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.91187 * 0.02562 * 12 11 9 24 24 H 1.08003 * 119.92946 * 179.70113 * 13 12 11 25 25 H 1.08003 * 120.17001 * 0.02747 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.4868 2.0463 -1.4000 5 1 1.4367 2.6526 0.7001 6 1 3.5368 1.4400 0.7001 7 6 2.0070 -1.2156 0.0005 8 1 3.0870 -1.2156 0.0001 9 6 1.2985 -2.4426 0.0005 10 8 0.0801 -2.4426 0.0005 11 6 2.0362 -3.7205 0.0005 12 6 3.4371 -3.7208 0.0011 13 6 4.1235 -4.9013 0.0006 14 6 3.4346 -6.1098 0.0000 15 7 3.8433 -7.4365 -0.0001 16 1 4.7603 -7.7530 -0.0007 17 6 2.7368 -8.2052 -0.0001 18 8 2.7272 -9.4209 -0.0007 19 8 1.6464 -7.4220 0.0005 20 6 2.0349 -6.1231 0.0016 21 6 1.3372 -4.9317 0.0030 22 1 -0.4850 0.8401 0.0004 23 1 3.9759 -2.7848 0.0019 24 1 5.2035 -4.8968 -0.0039 25 1 0.2571 -4.9351 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082381898.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = -85.398494 kcal Electronic energy + Delta-G solvation = -15225.143485 eV Core-core repulsion = 12361.913228 eV Total energy + Delta-G solvation = -2863.230257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.36728 -40.03266 -38.92948 -37.88875 -36.24316 -34.76840 -31.75790 -31.02403 -28.51924 -24.87016 -24.52670 -24.20982 -21.79355 -19.88685 -19.29227 -18.50142 -18.00515 -17.64716 -17.12665 -16.34398 -15.83615 -15.37258 -14.98536 -14.75206 -14.57564 -14.17461 -13.81856 -13.69099 -13.18341 -12.77083 -12.73359 -12.33454 -12.00725 -11.90101 -11.89168 -10.95808 -9.87898 -9.64644 -9.20903 -8.33962 -7.05926 -0.16397 0.15403 1.17735 1.24234 1.44550 1.46196 1.62660 1.81012 2.11424 2.25457 2.72115 3.28055 3.71863 3.76319 4.00206 4.25431 4.28936 4.37436 4.80580 4.95031 5.13788 5.29795 5.44067 5.52669 5.56683 5.98097 6.06138 6.60100 6.71478 6.79075 8.25184 8.50258 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.062248 B = 0.005935 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.708974 B = 4716.472180 C = 5156.338969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.021 3.979 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.111 0.889 9 C 0.359 3.641 10 O -0.599 6.599 11 C -0.115 4.115 12 C -0.062 4.062 13 C -0.082 4.082 14 C 0.072 3.928 15 N -0.614 5.614 16 H 0.460 0.540 17 C 0.633 3.367 18 O -0.526 6.526 19 O -0.254 6.254 20 C 0.004 3.996 21 C -0.070 4.070 22 H 0.282 0.718 23 H 0.167 0.833 24 H 0.189 0.811 25 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 -3.903 0.018 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.199 4.199 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.160 1.160 7 C -0.559 4.559 8 H 0.129 0.871 9 C 0.260 3.740 10 O -0.494 6.494 11 C -0.117 4.117 12 C -0.081 4.081 13 C -0.102 4.102 14 C -0.027 4.027 15 N -0.272 5.272 16 H 0.308 0.692 17 C 0.388 3.612 18 O -0.413 6.413 19 O -0.160 6.160 20 C -0.042 4.042 21 C -0.089 4.089 22 H 0.092 0.908 23 H 0.185 0.815 24 H 0.206 0.794 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.535 -4.660 0.023 13.374 hybrid contribution -0.155 0.199 -0.017 0.252 sum 12.381 -4.462 0.006 13.160 Atomic orbital electron populations 1.70115 1.10231 1.30015 1.31136 1.27338 0.95425 1.05852 0.91259 0.85017 0.79302 0.74456 0.79714 1.18447 1.20180 1.15973 1.21497 0.96765 0.91439 1.46237 0.87098 1.18762 0.88264 0.87960 0.79026 1.90500 1.17369 1.89466 1.52049 1.21402 0.96024 0.94495 0.99796 1.21390 0.91822 0.99601 0.95268 1.20240 1.02137 0.86291 1.01528 1.18721 0.91696 0.86744 1.05581 1.43119 1.10557 1.03853 1.69674 0.69228 1.18590 0.78982 0.85367 0.78291 1.91126 1.84151 1.08015 1.58017 1.84946 1.34177 1.16529 1.80349 1.18907 0.92739 0.82353 1.10171 1.20053 1.00350 0.87731 1.00805 0.90751 0.81530 0.79401 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.24 11.73 21.89 0.26 -43.99 15 2 C 0.02 1.03 5.50 85.40 0.47 1.50 15 3 Si 1.00 35.46 29.56 68.60 2.03 37.48 15 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 5 H -0.28 -9.78 7.11 99.48 0.71 -9.07 15 6 H -0.24 -7.50 7.11 99.48 0.71 -6.80 15 7 C -0.53 -26.31 8.85 23.64 0.21 -26.10 15 8 H 0.11 4.53 6.00 -2.91 -0.02 4.52 15 9 C 0.36 19.35 6.90 25.58 0.18 19.53 15 10 O -0.60 -38.29 14.88 -4.78 -0.07 -38.36 15 11 C -0.11 -4.84 5.89 -19.98 -0.12 -4.96 15 12 C -0.06 -1.87 9.38 22.33 0.21 -1.66 15 13 C -0.08 -1.81 10.00 22.08 0.22 -1.59 15 14 C 0.07 1.90 7.26 38.67 0.28 2.18 15 15 N -0.61 -13.68 6.18 -429.81 -2.66 -16.34 15 16 H 0.46 6.11 8.96 -92.71 -0.83 5.28 15 17 C 0.63 19.79 9.43 129.80 1.22 21.02 15 18 O -0.53 -18.77 18.05 19.26 0.35 -18.42 15 19 O -0.25 -9.11 10.73 8.24 0.09 -9.02 15 20 C 0.00 0.14 7.35 22.65 0.17 0.31 15 21 C -0.07 -2.89 9.61 22.62 0.22 -2.68 15 22 H 0.28 14.23 8.29 -92.70 -0.77 13.46 15 23 H 0.17 4.36 6.18 -2.91 -0.02 4.34 15 24 H 0.19 2.14 8.06 -2.91 -0.02 2.12 15 25 H 0.12 5.29 7.65 -2.91 -0.02 5.27 15 Total: -1.00 -73.61 237.76 3.49 -70.12 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.44 Total: 10.97 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 3.06 Total: 7.55 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -2.40 Total: -60.32 kcal Atomic # 8 Polarization: -66.16 SS G_CDS: 0.36 Total: -65.80 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.48 kcal Total: -73.61 3.49 -70.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082381898.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.279 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds