Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47147 * 299.99540 * 3 2 1 6 6 H 1.48493 * 109.47364 * 59.99925 * 3 2 1 7 7 C 1.40214 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.39698 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.38952 * 126.10865 * 179.97438 * 9 7 2 11 11 N 1.29848 * 114.86683 * 179.97438 * 10 9 7 12 12 C 1.30894 * 117.61437 * 359.97438 * 11 10 9 13 13 C 1.47425 * 125.13152 * 179.97438 * 12 11 10 14 14 C 1.39910 * 120.14560 * 359.75414 * 13 12 11 15 15 N 1.31917 * 119.82804 * 180.31442 * 14 13 12 16 16 C 1.32276 * 120.12116 * 359.93746 * 15 14 13 17 17 C 1.38567 * 120.29633 * 0.03739 * 16 15 14 18 18 N 1.31912 * 120.16974 * 0.02562 * 17 16 15 19 19 S 1.76085 * 109.73568 * 0.24491 * 12 11 10 20 20 H 0.96996 * 120.00420 * 0.02562 * 1 2 3 21 21 H 1.07995 * 122.56887 * 0.02562 * 10 9 7 22 22 H 1.08004 * 120.08506 * 0.25522 * 14 13 12 23 23 H 1.08008 * 119.85204 * 180.02562 * 16 15 14 24 24 H 1.07993 * 119.91652 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7016 1.3465 0.0006 5 1 1.8828 2.3965 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0087 -1.2142 0.0005 8 1 3.0887 -1.2142 0.0010 9 6 1.3103 -2.4241 0.0005 10 6 1.8732 -3.6945 0.0005 11 7 1.0172 -4.6710 0.0011 12 6 -0.2549 -4.3627 0.0021 13 6 -1.3634 -5.3346 0.0022 14 6 -1.0941 -6.7075 -0.0039 15 7 -2.0907 -7.5717 -0.0100 16 6 -3.3418 -7.1421 -0.0090 17 6 -3.6144 -5.7835 -0.0025 18 7 -2.6266 -4.9092 0.0024 19 16 -0.4424 -2.6118 -0.0047 20 1 -0.4850 0.8400 -0.0004 21 1 2.9408 -3.8574 0.0010 22 1 -0.0728 -7.0589 -0.0046 23 1 -4.1545 -7.8534 -0.0136 24 1 -4.6381 -5.4395 -0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418803.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 59.129407 kcal Electronic energy + Delta-G solvation = -12938.461727 eV Core-core repulsion = 10556.544292 eV Total energy + Delta-G solvation = -2381.917435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.10416 -37.41127 -34.65084 -33.54311 -31.41803 -29.51578 -26.12981 -23.97922 -23.66057 -22.04103 -18.94158 -18.22904 -16.79292 -16.31497 -15.89471 -15.18705 -14.69851 -14.13944 -13.79985 -12.86948 -12.65954 -12.53174 -12.18019 -11.95780 -11.72093 -11.27040 -10.91351 -10.68552 -10.61977 -10.12625 -9.45112 -9.00308 -8.57778 -8.09187 -7.91926 -7.32612 -7.18406 -4.87744 1.21781 1.75939 2.38341 2.72358 2.81270 2.89220 3.23090 3.41734 3.81915 3.93846 4.49872 4.64126 4.91387 4.92363 5.23975 5.45211 5.93127 6.08114 6.17632 6.38222 6.60071 6.79696 7.10654 7.34055 7.57754 7.87653 7.94633 8.10506 8.50493 9.38129 9.44323 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.061706 B = 0.006640 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.657038 B = 4215.988088 C = 4659.796230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.327 4.327 8 H 0.108 0.892 9 C -0.014 4.014 10 C -0.131 4.131 11 N -0.401 5.401 12 C -0.176 4.176 13 C 0.224 3.776 14 C 0.041 3.959 15 N -0.437 5.437 16 C -0.019 4.019 17 C 0.066 3.934 18 N -0.465 5.465 19 S 0.144 5.856 20 H 0.305 0.695 21 H 0.145 0.855 22 H 0.167 0.833 23 H 0.155 0.845 24 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 0.614 -0.014 2.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.366 4.366 8 H 0.126 0.874 9 C -0.139 4.139 10 C -0.296 4.296 11 N -0.114 5.114 12 C -0.432 4.432 13 C 0.086 3.914 14 C -0.125 4.125 15 N -0.151 5.151 16 C -0.178 4.178 17 C -0.096 4.096 18 N -0.181 5.181 19 S 0.396 5.604 20 H 0.119 0.881 21 H 0.162 0.838 22 H 0.184 0.816 23 H 0.172 0.828 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.298 0.664 -0.023 3.364 hybrid contribution 1.147 0.561 0.009 1.277 sum -2.151 1.225 -0.014 2.475 Atomic orbital electron populations 1.68975 1.08025 1.31820 1.27966 1.26492 0.95354 1.03507 0.93238 0.85609 0.80493 0.77945 0.79367 1.17549 1.18958 1.18963 1.19514 0.96163 0.88520 1.32410 0.87448 1.23638 0.96278 0.97286 0.96680 1.21501 0.98198 0.86213 1.23670 1.65281 1.00806 1.37591 1.07682 1.23862 0.90884 0.96379 1.32103 1.19584 0.89626 0.91340 0.90867 1.23599 0.99141 0.89863 0.99869 1.68244 1.00045 1.38714 1.08093 1.23369 0.94786 0.95544 1.04086 1.23520 0.99072 0.90912 0.96075 1.68477 0.99250 1.37930 1.12480 1.85215 1.03152 0.98164 1.73866 0.88143 0.83814 0.81583 0.82771 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.56 10.73 55.56 0.60 -15.97 14 2 C 0.04 0.84 5.50 -17.27 -0.09 0.75 14 3 Si 0.94 15.43 29.56 -169.99 -5.03 10.40 14 4 H -0.25 -4.02 7.11 56.52 0.40 -3.62 14 5 H -0.26 -4.29 7.11 56.52 0.40 -3.89 14 6 H -0.26 -4.29 7.11 56.52 0.40 -3.89 14 7 C -0.33 -7.46 9.32 -38.29 -0.36 -7.81 14 8 H 0.11 2.21 7.85 -52.49 -0.41 1.80 14 9 C -0.01 -0.34 6.24 -38.77 -0.24 -0.58 14 10 C -0.13 -3.23 11.35 -18.13 -0.21 -3.43 14 11 N -0.40 -10.19 10.04 -10.43 -0.10 -10.29 14 12 C -0.18 -4.47 7.38 -14.21 -0.10 -4.58 14 13 C 0.22 5.19 6.75 -82.87 -0.56 4.63 14 14 C 0.04 0.86 10.87 -16.89 -0.18 0.68 14 15 N -0.44 -8.45 10.49 -12.63 -0.13 -8.59 14 16 C -0.02 -0.32 11.22 -17.24 -0.19 -0.51 14 17 C 0.07 1.13 11.22 -17.40 -0.20 0.94 14 18 N -0.46 -10.06 10.25 -9.67 -0.10 -10.16 14 19 S 0.14 3.64 20.23 -107.50 -2.18 1.46 14 20 H 0.31 5.99 8.29 -40.82 -0.34 5.65 14 21 H 0.14 3.18 8.06 -52.49 -0.42 2.75 14 22 H 0.17 3.42 7.81 -52.48 -0.41 3.01 14 23 H 0.16 1.89 8.06 -52.48 -0.42 1.47 14 24 H 0.16 2.03 8.06 -52.49 -0.42 1.61 14 LS Contribution 240.59 15.07 3.63 3.63 Total: -1.00 -27.87 240.59 -6.67 -34.55 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -1.22 Total: 4.89 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.14 Total: -9.92 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.26 Total: -45.01 kcal Atomic # 14 Polarization: 15.43 SS G_CDS: -5.03 Total: 10.40 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.18 Total: 1.46 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.87 -6.67 -34.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418803.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.679 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds