Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47147 * 299.99540 * 3 2 1 6 6 H 1.48493 * 109.47364 * 59.99925 * 3 2 1 7 7 C 1.40214 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.39698 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.38952 * 126.10865 * 179.97438 * 9 7 2 11 11 N 1.29848 * 114.86683 * 179.97438 * 10 9 7 12 12 C 1.30894 * 117.61437 * 359.97438 * 11 10 9 13 13 C 1.47425 * 125.13152 * 179.97438 * 12 11 10 14 14 C 1.39910 * 120.14560 * 359.75414 * 13 12 11 15 15 N 1.31917 * 119.82804 * 180.31442 * 14 13 12 16 16 C 1.32276 * 120.12116 * 359.93746 * 15 14 13 17 17 C 1.38567 * 120.29633 * 0.03739 * 16 15 14 18 18 N 1.31912 * 120.16974 * 0.02562 * 17 16 15 19 19 S 1.76085 * 109.73568 * 0.24491 * 12 11 10 20 20 H 0.96996 * 120.00420 * 0.02562 * 1 2 3 21 21 H 1.07995 * 122.56887 * 0.02562 * 10 9 7 22 22 H 1.08004 * 120.08506 * 0.25522 * 14 13 12 23 23 H 1.08008 * 119.85204 * 180.02562 * 16 15 14 24 24 H 1.07993 * 119.91652 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7016 1.3465 0.0006 5 1 1.8828 2.3965 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0087 -1.2142 0.0005 8 1 3.0887 -1.2142 0.0010 9 6 1.3103 -2.4241 0.0005 10 6 1.8732 -3.6945 0.0005 11 7 1.0172 -4.6710 0.0011 12 6 -0.2549 -4.3627 0.0021 13 6 -1.3634 -5.3346 0.0022 14 6 -1.0941 -6.7075 -0.0039 15 7 -2.0907 -7.5717 -0.0100 16 6 -3.3418 -7.1421 -0.0090 17 6 -3.6144 -5.7835 -0.0025 18 7 -2.6266 -4.9092 0.0024 19 16 -0.4424 -2.6118 -0.0047 20 1 -0.4850 0.8400 -0.0004 21 1 2.9408 -3.8574 0.0010 22 1 -0.0728 -7.0589 -0.0046 23 1 -4.1545 -7.8534 -0.0136 24 1 -4.6381 -5.4395 -0.0022 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082418803.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = 40.310274 kcal Electronic energy + Delta-G solvation = -12939.277785 eV Core-core repulsion = 10556.544292 eV Total energy + Delta-G solvation = -2382.733494 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.63545 -39.21919 -36.35848 -35.09462 -33.00655 -31.25097 -27.81639 -25.64083 -25.23217 -23.74458 -20.68118 -19.97590 -18.39713 -17.84699 -17.42051 -16.93741 -16.16896 -15.73561 -15.31375 -14.45327 -14.45003 -14.26458 -13.76541 -13.51234 -13.16188 -12.96424 -12.46481 -12.17981 -11.98938 -11.64628 -11.33200 -10.59994 -10.23669 -9.79630 -9.73507 -9.03991 -9.00451 -6.67659 -0.35234 0.23496 0.73865 1.36466 1.39641 1.53239 1.60025 1.90087 2.11341 2.27260 2.86712 3.12760 3.16142 3.48543 3.77302 4.07109 4.44433 4.56252 4.72181 4.73005 4.89286 4.99534 5.54309 5.63441 5.83257 6.15712 6.19909 6.50960 6.98378 7.59079 7.78243 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.061706 B = 0.006640 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.657038 B = 4215.988088 C = 4659.796230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.003 3.997 3 Si 1.024 2.976 4 H -0.242 1.242 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.335 4.335 8 H 0.128 0.872 9 C -0.037 4.037 10 C -0.162 4.162 11 N -0.414 5.414 12 C -0.197 4.197 13 C 0.191 3.809 14 C 0.029 3.971 15 N -0.446 5.446 16 C 0.007 3.993 17 C 0.069 3.931 18 N -0.489 5.489 19 S 0.103 5.897 20 H 0.318 0.682 21 H 0.160 0.840 22 H 0.159 0.841 23 H 0.209 0.791 24 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 1.210 -0.019 3.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.165 1.165 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.372 4.372 8 H 0.146 0.854 9 C -0.162 4.162 10 C -0.325 4.325 11 N -0.126 5.126 12 C -0.453 4.453 13 C 0.054 3.946 14 C -0.133 4.133 15 N -0.161 5.161 16 C -0.153 4.153 17 C -0.093 4.093 18 N -0.206 5.206 19 S 0.354 5.646 20 H 0.131 0.869 21 H 0.177 0.823 22 H 0.177 0.823 23 H 0.226 0.774 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.270 1.239 -0.028 4.446 hybrid contribution 1.216 0.311 0.010 1.255 sum -3.054 1.550 -0.017 3.425 Atomic orbital electron populations 1.69018 1.09737 1.33609 1.26873 1.27633 0.95996 1.06698 0.91722 0.84484 0.79344 0.72636 0.79530 1.16453 1.18324 1.18335 1.20071 0.97350 0.88662 1.31164 0.85444 1.23919 0.95938 0.98333 0.98022 1.21765 0.98919 0.86329 1.25510 1.65269 1.01168 1.37955 1.08193 1.24240 0.91512 0.96583 1.32991 1.19537 0.89912 0.91632 0.93480 1.23416 0.99639 0.89377 1.00891 1.68329 1.00935 1.38277 1.08510 1.24308 0.94834 0.96508 0.99647 1.24395 1.00058 0.90975 0.93916 1.68440 0.99484 1.39885 1.12779 1.85025 1.04529 0.99373 1.75627 0.86865 0.82321 0.82327 0.77394 0.77647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -34.26 10.73 21.88 0.23 -34.03 14 2 C 0.00 0.11 5.50 85.33 0.47 0.58 14 3 Si 1.02 29.88 29.56 68.60 2.03 31.91 14 4 H -0.24 -6.64 7.11 99.48 0.71 -5.93 14 5 H -0.26 -7.31 7.11 99.48 0.71 -6.61 14 6 H -0.26 -7.32 7.11 99.48 0.71 -6.61 14 7 C -0.33 -15.28 9.32 23.10 0.22 -15.06 14 8 H 0.13 5.14 7.85 -2.91 -0.02 5.12 14 9 C -0.04 -1.93 6.24 22.79 0.14 -1.79 14 10 C -0.16 -8.32 11.35 85.16 0.97 -7.36 14 11 N -0.41 -22.05 10.04 -186.91 -1.88 -23.92 14 12 C -0.20 -10.43 7.38 87.25 0.64 -9.79 14 13 C 0.19 9.07 6.75 41.75 0.28 9.35 14 14 C 0.03 1.24 10.87 85.09 0.92 2.17 14 15 N -0.45 -16.48 10.49 -193.88 -2.03 -18.51 14 16 C 0.01 0.22 11.22 84.70 0.95 1.17 14 17 C 0.07 2.16 11.22 84.76 0.95 3.11 14 18 N -0.49 -20.95 10.25 -184.51 -1.89 -22.84 14 19 S 0.10 5.42 20.23 -56.49 -1.14 4.28 14 20 H 0.32 12.30 8.29 -92.71 -0.77 11.53 14 21 H 0.16 7.30 8.06 -2.91 -0.02 7.27 14 22 H 0.16 6.84 7.81 -2.91 -0.02 6.82 14 23 H 0.21 3.77 8.06 -2.91 -0.02 3.74 14 24 H 0.21 4.27 8.06 -2.91 -0.02 4.25 14 Total: -1.00 -63.25 240.59 2.10 -61.15 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.24 Total: 19.58 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.54 Total: -17.62 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -5.57 Total: -99.30 kcal Atomic # 14 Polarization: 29.88 SS G_CDS: 2.03 Total: 31.91 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.14 Total: 4.28 kcal Total: -63.25 2.10 -61.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418803.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.464 kcal (2) G-P(sol) polarization free energy of solvation -63.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds