Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31150 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48507 * 109.46980 * 239.99897 * 3 2 1 5 5 H 1.48495 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47446 * 119.99792 * 3 2 1 7 7 C 1.39217 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36828 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.39816 * 125.31430 * 0.20529 * 9 7 2 11 11 C 1.31736 * 109.88303 * 180.20056 * 10 9 7 12 12 C 1.47213 * 126.27474 * 179.90314 * 11 10 9 13 13 O 1.21549 * 120.00255 * 179.68414 * 12 11 10 14 14 O 1.34814 * 120.00345 * 359.68287 * 12 11 10 15 15 C 1.46875 * 107.45307 * 359.63445 * 11 10 9 16 16 C 1.39698 * 134.09281 * 180.27268 * 15 11 10 17 17 C 1.38203 * 118.06589 * 179.97438 * 16 15 11 18 18 C 1.38722 * 119.40766 * 0.03894 * 17 16 15 19 19 N 1.31574 * 121.50883 * 359.95547 * 18 17 16 20 20 C 1.32561 * 121.65775 * 0.02714 * 19 18 17 21 21 H 0.97009 * 120.00196 * 0.02562 * 1 2 3 22 22 H 0.96700 * 117.00422 * 180.02562 * 14 12 11 23 23 H 1.07996 * 120.97118 * 359.92773 * 16 15 11 24 24 H 1.07997 * 120.29474 * 179.97438 * 17 16 15 25 25 H 1.07998 * 119.24627 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2455 1.6177 0.0000 4 1 3.0993 1.6963 -1.2126 5 1 1.2806 2.7464 -0.0006 6 1 3.0993 1.6964 1.2125 7 6 2.0076 -1.2057 0.0005 8 1 3.0876 -1.2057 0.0001 9 7 1.3234 -2.3906 0.0005 10 7 -0.0688 -2.5201 -0.0041 11 6 -0.4002 -3.7951 0.0017 12 6 -1.7679 -4.3395 0.0015 13 8 -1.9433 -5.5423 0.0014 14 8 -2.8260 -3.5041 0.0014 15 6 0.8451 -4.5739 0.0018 16 6 1.1372 -5.9400 0.0016 17 6 2.4657 -6.3209 0.0013 18 6 3.4535 -5.3469 0.0019 19 7 3.1556 -4.0654 0.0019 20 6 1.8990 -3.6432 0.0019 21 1 -0.4851 0.8401 -0.0004 22 1 -3.7045 -3.9082 0.0016 23 1 0.3479 -6.6771 0.0026 24 1 2.7324 -7.3674 0.0016 25 1 4.4908 -5.6475 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082822380.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = 14.313105 kcal Electronic energy + Delta-G solvation = -15620.653771 eV Core-core repulsion = 12794.040084 eV Total energy + Delta-G solvation = -2826.613687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45380 -39.07199 -37.10318 -35.37479 -33.88357 -32.07660 -30.17600 -28.99922 -26.07712 -23.76273 -22.79108 -21.66939 -19.86086 -17.93826 -17.63747 -16.60609 -15.67369 -15.33839 -15.08425 -15.05855 -14.47429 -14.15038 -13.42909 -12.71603 -12.44669 -11.97447 -11.95343 -11.80836 -11.27685 -11.23185 -10.95647 -10.69209 -10.12994 -10.03607 -9.57623 -9.30004 -8.62061 -8.04394 -7.75384 -6.91058 -4.47131 1.57690 2.00122 2.57297 2.90966 2.97788 2.99575 3.35418 3.70165 3.96691 4.00285 4.52429 4.85873 5.24267 5.42360 5.57449 5.80784 5.91280 6.22363 6.43730 6.52183 6.80578 6.89674 6.99189 7.09805 7.48721 7.59335 8.09114 8.53564 8.54664 8.87269 9.14305 10.03589 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.010836 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.041763 B = 2583.317731 C = 3811.516603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.035 3.965 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.278 4.278 8 H 0.133 0.867 9 N -0.136 5.136 10 N -0.142 5.142 11 C -0.083 4.083 12 C 0.579 3.421 13 O -0.539 6.539 14 O -0.501 6.501 15 C -0.166 4.166 16 C -0.015 4.015 17 C -0.224 4.224 18 C 0.116 3.884 19 N -0.471 5.471 20 C 0.206 3.794 21 H 0.285 0.715 22 H 0.401 0.599 23 H 0.130 0.870 24 H 0.125 0.875 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 -3.400 0.005 3.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.415 4.415 8 H 0.151 0.849 9 N 0.088 4.912 10 N 0.021 4.979 11 C -0.236 4.236 12 C 0.425 3.575 13 O -0.429 6.429 14 O -0.310 6.310 15 C -0.179 4.179 16 C -0.044 4.044 17 C -0.247 4.247 18 C -0.057 4.057 19 N -0.184 5.184 20 C -0.030 4.030 21 H 0.096 0.904 22 H 0.257 0.743 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.219 -1.566 0.000 1.984 hybrid contribution -0.623 -0.919 0.001 1.110 sum 0.596 -2.485 0.002 2.555 Atomic orbital electron populations 1.70099 1.06389 1.29497 1.32051 1.25858 0.95966 1.00859 0.95683 0.85670 0.79138 0.78216 0.80074 1.18661 1.19759 1.18654 1.20430 0.92782 0.79879 1.48422 0.84915 1.44933 1.02221 1.02827 1.41263 1.78333 0.88578 1.13838 1.17189 1.21166 0.89476 0.92022 1.20927 1.19205 0.83537 0.83178 0.71562 1.90795 1.86386 1.16091 1.49616 1.84781 1.17432 1.42819 1.85937 1.19587 0.91757 0.94187 1.12324 1.20909 0.96312 0.93601 0.93551 1.21630 0.93307 1.00078 1.09699 1.22250 0.99008 0.86646 0.97845 1.66336 1.19104 1.18225 1.14696 1.18880 0.89466 0.86472 1.08167 0.90394 0.74276 0.85187 0.85664 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.37 11.74 55.51 0.65 -18.72 15 2 C 0.04 0.85 5.50 -17.48 -0.10 0.76 15 3 Si 0.95 17.83 29.55 -169.99 -5.02 12.80 15 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 7 C -0.28 -7.17 10.21 -14.96 -0.15 -7.32 15 8 H 0.13 3.20 7.83 -52.49 -0.41 2.79 15 9 N -0.14 -3.71 3.73 -10.96 -0.04 -3.75 15 10 N -0.14 -3.90 10.22 34.44 0.35 -3.55 15 11 C -0.08 -2.10 7.31 -80.77 -0.59 -2.70 15 12 C 0.58 12.85 8.33 34.38 0.29 13.13 15 13 O -0.54 -11.95 16.90 -19.30 -0.33 -12.28 15 14 O -0.50 -9.50 13.44 -40.80 -0.55 -10.05 15 15 C -0.17 -4.04 6.25 -104.96 -0.66 -4.69 15 16 C -0.02 -0.32 9.94 -39.05 -0.39 -0.70 15 17 C -0.22 -3.91 10.10 -39.42 -0.40 -4.31 15 18 C 0.12 2.13 11.15 -17.48 -0.19 1.93 15 19 N -0.47 -10.77 10.38 -12.22 -0.13 -10.89 15 20 C 0.21 5.24 7.88 -155.44 -1.22 4.01 15 21 H 0.29 6.63 8.30 -40.82 -0.34 6.30 15 22 H 0.40 4.94 9.11 45.56 0.42 5.36 15 23 H 0.13 2.47 7.46 -52.49 -0.39 2.08 15 24 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.15 2.08 8.06 -52.49 -0.42 1.66 15 LS Contribution 242.78 15.07 3.66 3.66 Total: -1.00 -31.53 242.78 -5.19 -36.71 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -0.37 Total: 5.96 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.42 Total: 0.12 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.84 Total: -36.92 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.87 Total: -22.33 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.80 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.53 -5.19 -36.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082822380.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.025 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds