Wall clock time and date at job start Mon Mar 30 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86808 * 119.99752 * 2 1 4 4 H 1.48505 * 109.47126 * 273.55135 * 3 2 1 5 5 H 1.48499 * 109.47274 * 33.54925 * 3 2 1 6 6 H 1.48503 * 109.46973 * 153.55495 * 3 2 1 7 7 C 1.39869 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00088 * 159.00912 * 7 2 1 9 9 C 1.41163 * 119.99859 * 339.01204 * 7 2 1 10 10 C 1.41330 * 120.98698 * 316.55549 * 9 7 2 11 11 Cl 1.73602 * 120.57248 * 0.02562 * 10 9 7 12 12 N 1.31949 * 118.85147 * 179.97438 * 10 9 7 13 13 C 1.32766 * 121.02524 * 0.02562 * 12 10 9 14 14 N 1.37945 * 118.88760 * 179.97438 * 13 12 10 15 15 N 1.32763 * 122.21768 * 0.02562 * 13 12 10 16 16 C 1.31953 * 121.02819 * 359.97435 * 15 13 12 17 17 Cl 1.73598 * 120.57012 * 180.02562 * 16 15 13 18 18 H 0.97002 * 120.00004 * 0.02562 * 1 2 3 19 19 H 0.96998 * 120.00036 * 0.02562 * 14 13 12 20 20 H 0.96998 * 119.99794 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.4156 2.0899 -1.3974 5 1 1.4802 2.6299 0.7737 6 1 3.5763 1.4198 0.6235 7 6 2.0086 -1.2113 0.0005 8 1 3.0349 -1.2424 -0.3345 9 6 1.3731 -2.3930 0.4389 10 6 0.5673 -2.3981 1.6001 11 17 0.3366 -0.9448 2.5211 12 7 -0.0073 -3.5264 1.9713 13 6 0.1626 -4.6429 1.2733 14 7 -0.4585 -5.7977 1.7018 15 7 0.9109 -4.6856 0.1775 16 6 1.5245 -3.6064 -0.2696 17 17 2.4995 -3.6756 -1.7042 18 1 -0.4850 0.8401 -0.0004 19 1 -1.0086 -5.7848 2.5005 20 1 -0.3450 -6.6226 1.2042 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593293.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:28 Heat of formation + Delta-G solvation = 12.256701 kcal Electronic energy + Delta-G solvation = -12131.168638 eV Core-core repulsion = 9606.908999 eV Total energy + Delta-G solvation = -2524.259639 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 232.982 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.21336 -37.45756 -37.38998 -36.02802 -34.69645 -33.93467 -31.46799 -26.95262 -24.89171 -23.67805 -19.58165 -18.86222 -18.76466 -16.98857 -16.28718 -15.93452 -15.69941 -15.20592 -14.99232 -13.76658 -13.39010 -13.33011 -12.91311 -12.64821 -12.42012 -12.06020 -11.81874 -11.43958 -11.05847 -10.80947 -10.37869 -10.04731 -8.99483 -8.62736 -6.35804 0.27733 0.62389 0.93169 1.40608 1.46647 1.52121 1.58890 2.26204 2.74367 2.78608 3.31540 4.06892 4.23046 4.88943 5.12590 5.30183 5.92339 6.23275 6.48429 6.65922 6.74788 6.84183 7.73079 8.33616 Molecular weight = 232.98amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.013645 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.654993 B = 2051.489293 C = 2947.586774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.059 3.941 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.465 4.465 8 H 0.094 0.906 9 C -0.009 4.009 10 C 0.182 3.818 11 Cl -0.023 7.023 12 N -0.558 5.558 13 C 0.478 3.522 14 N -0.820 5.820 15 N -0.553 5.553 16 C 0.149 3.851 17 Cl -0.026 7.026 18 H 0.291 0.709 19 H 0.415 0.585 20 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -1.836 1.347 2.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.160 4.160 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.112 0.888 9 C -0.019 4.019 10 C 0.005 3.995 11 Cl 0.005 6.995 12 N -0.283 5.283 13 C 0.121 3.879 14 N -0.376 5.376 15 N -0.277 5.277 16 C -0.026 4.026 17 Cl 0.002 6.998 18 H 0.102 0.898 19 H 0.247 0.753 20 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.628 -2.368 1.579 2.914 hybrid contribution 0.348 1.151 -0.247 1.228 sum 0.976 -1.217 1.331 2.051 Atomic orbital electron populations 1.69884 1.08978 1.31221 1.32767 1.26303 0.94995 1.03307 0.91364 0.85527 0.79993 0.77133 0.79578 1.18624 1.19323 1.17694 1.19233 0.99696 0.90902 1.39656 0.88818 1.18493 0.96625 0.94413 0.92409 1.21983 0.99414 0.86723 0.91364 1.98258 1.95532 1.33358 1.72323 1.66584 1.27366 0.98894 1.35424 1.18579 0.94174 0.87188 0.87922 1.40972 1.56595 1.06494 1.33512 1.66553 1.13272 1.32221 1.15683 1.21979 0.99010 0.90149 0.91481 1.98274 1.67799 1.98404 1.35273 0.89786 0.75297 0.75222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.34 11.11 21.82 0.24 -39.10 14 2 C 0.06 2.75 3.84 85.22 0.33 3.08 14 3 Si 0.96 36.03 29.61 68.60 2.03 38.06 14 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 14 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 14 6 H -0.25 -9.34 7.11 99.48 0.71 -8.64 14 7 C -0.47 -22.85 7.98 23.38 0.19 -22.66 14 8 H 0.09 4.45 7.79 -2.91 -0.02 4.42 14 9 C -0.01 -0.47 5.30 -21.04 -0.11 -0.58 14 10 C 0.18 9.11 6.98 85.44 0.60 9.71 14 11 Cl -0.02 -1.06 25.22 -2.72 -0.07 -1.13 14 12 N -0.56 -26.62 10.42 -187.07 -1.95 -28.57 14 13 C 0.48 21.07 8.65 261.47 2.26 23.33 14 14 N -0.82 -26.36 9.04 -59.74 -0.54 -26.90 14 15 N -0.55 -25.62 10.42 -187.08 -1.95 -27.57 14 16 C 0.15 7.22 7.40 85.43 0.63 7.85 14 17 Cl -0.03 -1.07 28.26 -2.72 -0.08 -1.15 14 18 H 0.29 13.09 8.30 -92.71 -0.77 12.32 14 19 H 0.42 11.39 8.94 -92.71 -0.83 10.56 14 20 H 0.42 11.21 8.94 -92.71 -0.83 10.39 14 Total: -1.00 -55.72 219.49 1.25 -54.47 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.33 Total: 11.15 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 3.89 Total: 20.73 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -4.20 Total: -122.14 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.15 Total: -2.27 kcal Total: -55.72 1.25 -54.47 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593293.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.724 kcal (2) G-P(sol) polarization free energy of solvation -55.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds