Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 113.02582 * 2 1 4 4 C 1.48684 * 113.85435 * 131.93894 * 2 1 3 5 5 O 1.21284 * 130.30705 * 294.14738 * 4 2 1 6 6 N 1.31964 * 99.39065 * 114.16587 * 4 2 1 7 7 C 1.46502 * 130.90225 * 179.74297 * 6 4 2 8 8 C 1.50693 * 109.47000 * 85.00187 * 7 6 4 9 9 H 1.07996 * 120.00362 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99999 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99308 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99967 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47268 * 90.00629 * 12 10 8 14 14 H 1.48504 * 109.47088 * 209.99895 * 12 10 8 15 15 H 1.48497 * 109.47392 * 330.00076 * 12 10 8 16 16 S 1.64063 * 98.18987 * 0.02562 * 6 4 2 17 17 O 1.42102 * 108.85193 * 111.15737 * 16 6 4 18 18 O 1.42103 * 108.85017 * 248.83579 * 16 6 4 19 19 H 1.09001 * 109.46742 * 307.56572 * 1 2 3 20 20 H 1.08998 * 109.47156 * 67.56756 * 1 2 3 21 21 H 1.09003 * 109.46800 * 187.56994 * 1 2 3 22 22 H 1.09005 * 109.47000 * 172.43110 * 3 2 1 23 23 H 1.08995 * 109.47227 * 292.43447 * 3 2 1 24 24 H 1.09005 * 109.46977 * 52.43697 * 3 2 1 25 25 H 1.08997 * 109.46538 * 205.00295 * 7 6 4 26 26 H 1.08998 * 109.47296 * 325.00111 * 7 6 4 27 27 H 0.97009 * 119.99473 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1284 1.4081 0.0000 4 6 2.1313 -0.9088 1.0115 5 8 2.1025 -0.8629 2.2231 6 7 2.7058 -1.7800 0.2038 7 6 3.5017 -2.9756 0.4922 8 6 2.5827 -4.1482 0.7187 9 1 1.5128 -4.0160 0.6547 10 6 3.1079 -5.3899 1.0078 11 7 4.4108 -5.5507 1.0863 12 14 1.9687 -6.8433 1.2892 13 1 1.7112 -7.5280 -0.0031 14 1 2.6048 -7.7949 2.2353 15 1 0.6845 -6.3625 1.8593 16 16 2.2594 -1.1051 -1.2234 17 8 3.4137 -0.5777 -1.8629 18 8 1.3205 -1.9596 -1.8617 19 1 -0.3633 0.6266 0.8146 20 1 -0.3633 0.3921 -0.9499 21 1 -0.3633 -1.0187 0.1354 22 1 3.2081 1.3440 0.1354 23 1 1.9096 1.8959 -0.9498 24 1 1.6939 1.9875 0.8147 25 1 4.1590 -3.1866 -0.3513 26 1 4.1014 -2.8059 1.3865 27 1 4.7803 -6.4244 1.2892 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086888039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -82.753148 kcal Electronic energy + Delta-G solvation = -15119.070842 eV Core-core repulsion = 12391.399247 eV Total energy + Delta-G solvation = -2727.671595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40892 -37.22358 -35.82928 -35.70192 -34.45804 -32.63276 -28.43569 -27.67913 -24.51957 -21.74568 -20.99144 -18.42054 -17.91765 -17.01305 -16.41197 -15.91402 -15.19202 -14.71680 -14.47945 -14.19024 -13.27438 -13.13146 -12.89354 -12.52587 -12.37643 -12.19173 -12.06288 -12.02185 -11.61493 -11.50229 -11.09409 -10.75812 -10.59639 -10.29020 -10.11545 -9.50009 -8.92992 -8.59445 -6.23130 -4.29709 0.27972 2.31182 2.54825 3.26194 3.31603 3.36827 3.45377 3.65324 4.22042 4.33061 4.60664 4.97584 5.12743 5.34729 5.42111 5.49837 5.55857 5.87517 5.88927 6.02344 6.64022 6.98357 7.23507 7.72886 7.92330 7.96652 8.74092 9.37204 10.86089 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.036009 B = 0.009289 C = 0.008989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.400362 B = 3013.657369 C = 3114.324612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.591 4.591 3 C -0.107 4.107 4 C 0.555 3.445 5 O -0.465 6.465 6 N -0.905 5.905 7 C 0.253 3.747 8 C -0.545 4.545 9 H 0.068 0.932 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.906 3.094 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.271 1.271 16 S 2.596 3.404 17 O -0.928 6.928 18 O -0.912 6.912 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 11.658 -4.482 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.684 4.684 3 C -0.165 4.165 4 C 0.335 3.665 5 O -0.333 6.333 6 N -0.747 5.747 7 C 0.135 3.865 8 C -0.583 4.583 9 H 0.086 0.914 10 C -0.139 4.139 11 N -0.529 5.529 12 Si 0.733 3.267 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.196 1.196 16 S 2.686 3.314 17 O -0.918 6.918 18 O -0.902 6.902 19 H 0.100 0.900 20 H 0.096 0.904 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.267 11.209 -4.843 13.298 hybrid contribution -0.570 -0.756 1.095 1.448 sum -5.837 10.453 -3.748 12.545 Atomic orbital electron populations 1.21268 0.86621 1.04754 1.03969 1.30564 1.09147 1.11324 1.17339 1.21265 1.01350 0.89855 1.04074 1.18964 0.77736 0.80546 0.89258 1.90665 1.57695 1.73228 1.11759 1.56921 1.57673 1.34526 1.25602 1.19377 0.90101 0.78023 0.98997 1.21404 0.93797 0.93003 1.50129 0.91399 1.24958 0.95418 0.99022 0.94493 1.69927 1.10721 1.24495 1.47767 0.86359 0.80640 0.81435 0.78286 1.20182 1.20898 1.19577 1.05975 0.75687 0.76253 0.73506 1.93679 1.45541 1.78163 1.74405 1.93703 1.62300 1.59797 1.74397 0.89993 0.90444 0.90310 0.90619 0.90427 0.89961 0.93187 0.92893 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.98 37.16 0.33 -0.93 15 2 C -0.59 -8.45 1.53 -92.73 -0.14 -8.59 15 3 C -0.11 -1.17 8.99 37.16 0.33 -0.84 15 4 C 0.56 10.94 7.66 -13.18 -0.10 10.84 15 5 O -0.46 -10.62 18.03 5.55 0.10 -10.52 15 6 N -0.91 -19.21 3.09 -90.75 -0.28 -19.49 15 7 C 0.25 6.46 6.34 -5.20 -0.03 6.42 15 8 C -0.54 -15.25 9.39 -34.44 -0.32 -15.57 15 9 H 0.07 1.89 7.81 -52.49 -0.41 1.48 15 10 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 11 N -0.89 -25.68 13.29 55.43 0.74 -24.94 15 12 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 15 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 16 S 2.60 44.55 7.36 -107.50 -0.79 43.76 15 17 O -0.93 -16.72 17.87 -57.04 -1.02 -17.74 15 18 O -0.91 -17.55 17.86 -57.04 -1.02 -18.57 15 19 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.08 1.03 8.09 -51.93 -0.42 0.61 15 22 H 0.07 0.87 8.09 -51.93 -0.42 0.45 15 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.05 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -33.41 257.86 -6.36 -39.77 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: -2.92 Total: -5.74 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.03 Total: -6.95 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.46 Total: -44.43 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -1.94 Total: -46.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 44.55 SS G_CDS: -0.79 Total: 43.76 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.41 -6.36 -39.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086888039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.981 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds