Wall clock time and date at job start Mon Mar 30 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86800 * 119.99462 * 2 1 4 4 H 1.48498 * 109.47109 * 269.99962 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00391 * 3 2 1 6 6 H 1.48502 * 109.46821 * 150.00575 * 3 2 1 7 7 C 1.39076 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99713 * 359.97438 * 7 2 1 9 9 N 1.36790 * 120.00056 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99744 * 180.27638 * 9 7 2 11 11 O 1.21673 * 120.00212 * 359.71964 * 10 9 7 12 12 C 1.47066 * 119.99588 * 179.72274 * 10 9 7 13 13 N 1.30826 * 126.17673 * 359.68788 * 12 10 9 14 14 N 1.26257 * 116.24075 * 179.83957 * 13 12 10 15 15 C 1.30007 * 117.75670 * 0.46452 * 14 13 12 16 16 Cl 1.73597 * 125.54818 * 179.76695 * 15 14 13 17 17 S 1.71279 * 108.90830 * 359.74959 * 15 14 13 18 18 H 0.96999 * 120.00376 * 359.97438 * 1 2 3 19 19 H 0.97001 * 119.99710 * 359.97438 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4448 2.6527 0.7001 6 1 3.5450 1.4403 0.6999 7 6 2.0090 -1.2044 -0.0005 8 1 1.4690 -2.1397 -0.0005 9 7 3.3769 -1.2043 0.0000 10 6 4.0508 -2.3715 -0.0062 11 8 3.4425 -3.4252 -0.0070 12 6 5.5214 -2.3713 -0.0118 13 7 6.2935 -1.3152 -0.0172 14 7 7.5372 -1.5330 -0.0182 15 6 7.9352 -2.7706 -0.0232 16 17 9.5888 -3.2990 -0.0313 17 16 6.5626 -3.7951 -0.0200 18 1 -0.4850 0.8400 0.0004 19 1 3.8618 -0.3642 0.0004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087695298.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:24 Heat of formation + Delta-G solvation = 7.752909 kcal Electronic energy + Delta-G solvation = -11579.859612 eV Core-core repulsion = 9057.448380 eV Total energy + Delta-G solvation = -2522.411231 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 232.977 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.40764 -40.28953 -38.34250 -36.35038 -34.15206 -32.67589 -28.87029 -26.90463 -23.82229 -21.49187 -21.05148 -20.31144 -18.73594 -17.28747 -17.14765 -16.45894 -15.80503 -15.60914 -14.90555 -14.68317 -14.43295 -13.54700 -13.12676 -13.10393 -12.60294 -12.19171 -12.00866 -11.77084 -11.54618 -11.00980 -10.97838 -10.90237 -10.51198 -8.68185 -6.19159 -1.34269 -0.89148 -0.05406 0.42062 0.81552 1.29588 1.31472 1.39215 1.93819 2.07480 2.40975 2.98375 3.14565 3.46377 3.99729 5.23684 5.67301 6.23091 6.51890 6.96338 7.08549 7.51975 8.45004 Molecular weight = 232.98amu Principal moments of inertia in cm(-1) A = 0.053788 B = 0.006861 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.434124 B = 4079.803371 C = 4590.390485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.014 3.986 3 Si 0.944 3.056 4 H -0.251 1.251 5 H -0.256 1.256 6 H -0.244 1.244 7 C -0.321 4.321 8 H 0.085 0.915 9 N -0.526 5.526 10 C 0.494 3.506 11 O -0.604 6.604 12 C -0.037 4.037 13 N -0.244 5.244 14 N -0.267 5.267 15 C -0.005 4.005 16 Cl 0.082 6.918 17 S 0.332 5.668 18 H 0.293 0.707 19 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.656 -2.917 -0.047 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.193 4.193 3 Si 0.763 3.237 4 H -0.174 1.174 5 H -0.180 1.180 6 H -0.168 1.168 7 C -0.452 4.452 8 H 0.103 0.897 9 N -0.162 5.162 10 C 0.279 3.721 11 O -0.491 6.491 12 C -0.313 4.313 13 N -0.090 5.090 14 N -0.111 5.111 15 C -0.308 4.308 16 Cl 0.110 6.890 17 S 0.573 5.427 18 H 0.103 0.897 19 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 16.303 -3.278 -0.049 16.629 hybrid contribution 0.239 1.020 0.010 1.047 sum 16.543 -2.258 -0.039 16.696 Atomic orbital electron populations 1.69677 1.07746 1.30644 1.43950 1.26014 0.96379 1.02236 0.94636 0.85640 0.79607 0.77628 0.80823 1.17447 1.18034 1.16789 1.19326 0.79914 0.96458 1.49484 0.89745 1.41946 1.06843 1.07362 1.60089 1.16102 0.82934 0.84815 0.88204 1.90721 1.68017 1.31198 1.59158 1.29677 1.01350 0.93732 1.06572 1.72200 0.95962 1.25751 1.15057 1.71268 1.06921 1.17764 1.15157 1.29963 0.97800 0.94726 1.08299 1.98442 1.07442 1.86940 1.96211 1.84659 0.91118 1.04704 1.62248 0.89663 0.76812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.34 13.95 21.69 0.30 -48.04 13 2 C 0.01 0.70 5.50 84.97 0.47 1.17 13 3 Si 0.94 37.43 27.74 68.60 1.90 39.33 13 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 13 5 H -0.26 -9.66 7.11 99.48 0.71 -8.95 13 6 H -0.24 -9.07 6.52 99.48 0.65 -8.43 13 7 C -0.32 -17.72 10.16 84.12 0.85 -16.87 13 8 H 0.08 5.36 7.38 -2.91 -0.02 5.34 13 9 N -0.53 -25.54 5.08 -310.32 -1.58 -27.12 13 10 C 0.49 23.32 7.75 86.56 0.67 23.99 13 11 O -0.60 -32.15 16.55 -4.26 -0.07 -32.22 13 12 C -0.04 -1.41 7.57 87.16 0.66 -0.75 13 13 N -0.24 -9.14 11.37 -49.85 -0.57 -9.71 13 14 N -0.27 -8.87 11.60 -52.98 -0.61 -9.49 13 15 C -0.01 -0.15 8.20 130.51 1.07 0.93 13 16 Cl 0.08 1.59 29.33 -2.72 -0.08 1.51 13 17 S 0.33 9.26 23.15 -56.49 -1.31 7.95 13 18 H 0.29 14.42 8.31 -92.71 -0.77 13.65 13 19 H 0.40 17.33 5.45 -92.71 -0.51 16.82 13 Total: -1.00 -62.14 219.81 2.48 -59.66 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.77 Total: 9.65 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 3.72 Total: 8.47 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -2.45 Total: -94.36 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.07 Total: -32.22 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.90 Total: 39.33 kcal Atomic # 16 Polarization: 9.26 SS G_CDS: -1.31 Total: 7.95 kcal Atomic # 17 Polarization: 1.59 SS G_CDS: -0.08 Total: 1.51 kcal Total: -62.14 2.48 -59.66 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087695298.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.411 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds