Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31186 * 1 3 3 Si 1.86803 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46970 * 299.99812 * 3 2 1 6 6 H 1.48497 * 109.47223 * 59.99849 * 3 2 1 7 7 C 1.39175 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00179 * 198.60729 * 7 2 1 9 9 N 1.36991 * 119.99588 * 18.61256 * 7 2 1 10 10 C 1.34660 * 119.64062 * 43.57989 * 9 7 2 11 11 O 1.22032 * 119.96895 * 0.02562 * 10 9 7 12 12 C 1.40459 * 120.04948 * 179.72870 * 10 9 7 13 13 C 1.36472 * 119.34842 * 0.56881 * 12 10 9 14 14 C 1.40324 * 119.28259 * 359.45938 * 13 12 10 15 15 C 1.35308 * 119.93530 * 0.25366 * 14 13 12 16 16 C 1.50695 * 119.67599 * 179.97438 * 15 14 13 17 17 F 1.39910 * 109.46962 * 0.02562 * 16 15 14 18 18 F 1.39898 * 109.47181 * 119.99763 * 16 15 14 19 19 F 1.39893 * 109.47628 * 240.00307 * 16 15 14 20 20 H 0.97005 * 119.99762 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.32854 * 180.27551 * 12 10 9 22 22 H 1.07997 * 120.35429 * 179.73378 * 13 12 10 23 23 H 1.08008 * 120.02876 * 180.27323 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2459 1.6177 0.0000 4 1 3.7059 1.3463 -0.0006 5 1 1.8872 2.3964 -1.2125 6 1 1.8872 2.3965 1.2124 7 6 2.0078 -1.2053 0.0005 8 1 3.0454 -1.2296 0.2990 9 7 1.3765 -2.3608 -0.3776 10 6 0.5776 -2.3591 -1.4616 11 8 0.4199 -1.3318 -2.1011 12 6 -0.0694 -3.5403 -1.8604 13 6 0.1116 -4.6805 -1.1326 14 6 0.9498 -4.6508 -0.0075 15 6 1.5634 -3.4982 0.3471 16 6 2.4618 -3.4728 1.5567 17 9 2.4998 -4.7457 2.1362 18 9 3.7532 -3.0979 1.1707 19 9 1.9669 -2.5516 2.4860 20 1 -0.4850 0.8401 0.0004 21 1 -0.7076 -3.5452 -2.7316 22 1 -0.3813 -5.5968 -1.4220 23 1 1.1051 -5.5472 0.5746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088137377.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = -165.159070 kcal Electronic energy + Delta-G solvation = -16979.634497 eV Core-core repulsion = 13571.088821 eV Total energy + Delta-G solvation = -3408.545676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -51.14011 -48.66964 -48.53816 -41.91699 -37.48944 -36.02229 -33.74337 -31.47661 -27.77955 -27.14120 -23.93376 -23.48928 -20.48225 -19.57343 -19.46070 -19.04847 -17.64435 -17.38834 -16.63716 -16.03144 -15.95530 -15.50953 -15.37470 -15.20828 -15.02297 -14.73518 -14.72645 -13.87685 -13.71218 -13.33548 -13.10347 -12.93178 -12.59851 -12.44607 -12.17066 -11.31878 -10.81557 -10.25794 -8.92751 -8.61709 -6.61031 -0.05819 1.12189 1.30891 1.37749 1.47731 1.55329 2.06436 2.48731 2.70790 2.80605 3.11318 3.35127 3.52300 4.18974 4.36900 4.50618 4.69067 5.06441 5.24466 5.45710 5.66041 5.78186 6.31250 6.62858 6.91070 7.78718 8.33544 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.015117 C = 0.010450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.043175 B = 1851.773094 C = 2678.707256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.992 3.008 4 H -0.247 1.247 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.410 4.410 8 H 0.118 0.882 9 N -0.293 5.293 10 C 0.457 3.543 11 O -0.601 6.601 12 C -0.266 4.266 13 C -0.030 4.030 14 C -0.203 4.203 15 C 0.008 3.992 16 C 0.529 3.471 17 F -0.159 7.159 18 F -0.179 7.179 19 F -0.174 7.174 20 H 0.282 0.718 21 H 0.143 0.857 22 H 0.179 0.821 23 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -8.343 3.647 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.812 3.188 4 H -0.170 1.170 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.536 4.536 8 H 0.135 0.865 9 N 0.015 4.985 10 C 0.264 3.736 11 O -0.488 6.488 12 C -0.289 4.289 13 C -0.052 4.052 14 C -0.227 4.227 15 C -0.109 4.109 16 C 0.474 3.526 17 F -0.140 7.140 18 F -0.160 7.160 19 F -0.155 7.155 20 H 0.092 0.908 21 H 0.161 0.839 22 H 0.196 0.804 23 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.925 -7.507 3.284 8.700 hybrid contribution 0.233 0.991 0.039 1.019 sum 3.158 -6.516 3.324 7.967 Atomic orbital electron populations 1.69843 1.08949 1.30358 1.36171 1.26440 0.95720 1.04001 0.91545 0.84955 0.79504 0.75986 0.78401 1.17044 1.20560 1.18167 1.20311 0.97425 0.85250 1.50608 0.86470 1.41428 1.31844 1.07435 1.17759 1.17687 0.83947 0.91093 0.80842 1.90713 1.66148 1.36449 1.55512 1.22130 1.07704 0.93065 1.06050 1.21455 0.93718 0.98432 0.91585 1.20681 1.02849 0.96772 1.02427 1.20939 1.03840 0.91829 0.94325 1.17700 0.78460 0.73678 0.82728 1.93156 1.96409 1.38980 1.85445 1.93159 1.40387 1.91361 1.91086 1.93210 1.87493 1.67171 1.67616 0.90803 0.83898 0.80378 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.42 11.68 21.69 0.25 -48.16 14 2 C 0.04 2.05 4.34 85.01 0.37 2.41 14 3 Si 0.99 42.89 29.59 68.60 2.03 44.92 14 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 14 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 14 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 14 7 C -0.41 -22.33 7.46 84.11 0.63 -21.70 14 8 H 0.12 6.06 6.25 -2.91 -0.02 6.05 14 9 N -0.29 -15.32 2.64 -463.33 -1.22 -16.55 14 10 C 0.46 25.05 6.69 84.80 0.57 25.62 14 11 O -0.60 -38.00 14.74 -5.42 -0.08 -38.08 14 12 C -0.27 -11.38 9.99 22.40 0.22 -11.15 14 13 C -0.03 -0.97 10.10 22.36 0.23 -0.74 14 14 C -0.20 -6.89 9.40 22.10 0.21 -6.68 14 15 C 0.01 0.32 6.12 41.21 0.25 0.58 14 16 C 0.53 20.34 2.86 71.23 0.20 20.55 14 17 F -0.16 -4.93 15.90 44.97 0.72 -4.21 14 18 F -0.18 -6.95 15.52 44.97 0.70 -6.25 14 19 F -0.17 -7.32 16.41 44.97 0.74 -6.58 14 20 H 0.28 15.44 8.30 -92.70 -0.77 14.67 14 21 H 0.14 5.57 8.06 -2.91 -0.02 5.55 14 22 H 0.18 3.83 8.06 -2.91 -0.02 3.81 14 23 H 0.18 4.48 7.07 -2.91 -0.02 4.46 14 Total: -1.00 -69.14 222.50 7.07 -62.06 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.27 Total: 3.98 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 2.68 Total: 8.88 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.97 Total: -64.71 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.08 Total: -38.08 kcal Atomic # 9 Polarization: -19.20 SS G_CDS: 2.15 Total: -17.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.14 7.07 -62.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088137377.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.096 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds