Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29484 * 1 3 3 Si 1.86799 * 120.00480 * 2 1 4 4 H 1.48504 * 109.47250 * 240.00357 * 3 2 1 5 5 H 1.48504 * 109.46808 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47329 * 120.00170 * 3 2 1 7 7 C 1.46585 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 192.79678 * 7 2 1 9 9 C 1.39922 * 119.99928 * 12.79838 * 7 2 1 10 10 C 1.41174 * 120.09189 * 25.21343 * 9 7 2 11 11 C 1.38869 * 119.26188 * 180.02562 * 10 9 7 12 12 C 1.46311 * 133.83595 * 179.97438 * 11 10 9 13 13 N 1.30168 * 107.53544 * 179.31391 * 12 11 10 14 14 N 1.39782 * 110.21823 * 0.60654 * 13 12 11 15 15 H 0.96995 * 125.30609 * 179.43606 * 14 13 12 16 16 C 1.36186 * 109.39362 * 359.45065 * 14 13 12 17 17 C 1.40233 * 133.34965 * 179.97438 * 16 14 13 18 18 N 1.48012 * 119.79258 * 0.02678 * 17 16 14 19 19 O 1.31698 * 120.00193 * 179.72213 * 18 17 16 20 20 O 1.31700 * 120.00073 * 359.44932 * 18 17 16 21 21 C 1.35531 * 120.41597 * 179.74975 * 17 16 14 22 22 H 0.97006 * 119.99519 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.36736 * 0.04195 * 10 9 7 24 24 H 1.08002 * 126.22994 * 359.97438 * 12 11 10 25 25 H 1.07999 * 119.73316 * 180.23517 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2948 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 3.0827 1.6963 -1.2126 5 1 1.2640 2.7464 0.0006 6 1 3.0827 1.6963 1.2124 7 6 2.0277 -1.2695 -0.0006 8 1 3.0876 -1.2813 0.2066 9 6 1.3541 -2.4660 -0.2695 10 6 0.1680 -2.4540 -1.0351 11 6 -0.4868 -3.6515 -1.2912 12 6 -1.7024 -4.0050 -2.0247 13 7 -1.8415 -5.2973 -1.9536 14 7 -0.8021 -5.8545 -1.2034 15 1 -0.6964 -6.7984 -1.0064 16 6 0.0390 -4.8657 -0.7918 17 6 1.2156 -4.8583 -0.0287 18 7 1.7592 -6.1307 0.4969 19 8 2.8669 -6.1292 1.2093 20 8 1.1325 -7.2638 0.2566 21 6 1.8610 -3.6941 0.2258 22 1 -0.4850 0.8401 0.0004 23 1 -0.2255 -1.5237 -1.4176 24 1 -2.3584 -3.3198 -2.5410 25 1 2.7684 -3.7016 0.8116 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089197211.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = 91.270955 kcal Electronic energy + Delta-G solvation = -15487.025504 eV Core-core repulsion = 12663.748960 eV Total energy + Delta-G solvation = -2823.276544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62121 -38.17397 -36.51383 -33.80855 -33.65493 -31.70756 -29.76546 -29.55515 -25.82846 -25.03354 -22.02494 -21.30625 -20.83318 -18.38632 -17.65130 -17.10142 -16.08073 -15.70440 -15.31528 -15.05443 -14.06472 -14.04376 -13.60881 -13.03592 -12.35989 -11.87098 -11.57012 -11.31556 -11.01583 -10.83481 -10.68776 -10.61082 -10.26221 -10.15517 -10.07602 -9.82391 -9.44681 -8.24715 -7.66502 -7.29278 -4.68780 0.13743 1.79395 2.01229 2.28587 2.83495 2.83554 2.86160 3.06844 3.28119 3.58493 3.99140 4.89907 5.05290 5.26866 5.56082 5.69000 5.99682 6.18021 6.35035 6.51542 6.58958 6.83202 7.10094 7.26275 7.36082 7.60028 7.82335 7.92871 8.13297 8.18045 8.32946 9.61382 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.008777 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.710421 B = 3189.348429 C = 4113.861313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.074 3.926 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.054 4.054 11 C -0.146 4.146 12 C 0.069 3.931 13 N -0.262 5.262 14 N -0.498 5.498 15 H 0.441 0.559 16 C 0.080 3.920 17 C 0.007 3.993 18 N 0.012 4.988 19 O -0.213 6.213 20 O -0.251 6.251 21 C -0.108 4.108 22 H 0.295 0.705 23 H 0.147 0.853 24 H 0.194 0.806 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 2.585 -2.736 4.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.151 4.151 3 Si 0.749 3.251 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.110 0.890 9 C 0.069 3.931 10 C -0.078 4.078 11 C -0.154 4.154 12 C -0.130 4.130 13 N -0.076 5.076 14 N -0.219 5.219 15 H 0.287 0.713 16 C -0.037 4.037 17 C -0.087 4.087 18 N 0.472 4.528 19 O -0.399 6.399 20 O -0.427 6.427 21 C -0.131 4.131 22 H 0.108 0.892 23 H 0.165 0.835 24 H 0.211 0.789 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.565 2.131 -3.251 4.657 hybrid contribution 0.983 0.438 0.644 1.255 sum -1.581 2.569 -2.606 3.987 Atomic orbital electron populations 1.68991 1.08757 1.31265 1.29818 1.27444 0.94630 1.02127 0.90943 0.86057 0.80120 0.78244 0.80713 1.18180 1.19933 1.18350 1.20483 0.96493 0.88701 1.42784 0.89038 1.17226 0.92662 0.91014 0.92156 1.21610 0.95581 0.95444 0.95117 1.19805 0.97585 0.92783 1.05186 1.25032 0.96227 0.92182 0.99566 1.76307 1.08613 1.10766 1.11917 1.45714 1.20141 1.08910 1.47107 0.71279 1.17906 0.93170 0.90663 1.01979 1.18941 0.97997 0.81423 1.10298 1.50648 1.00379 1.04156 0.97626 1.96189 1.09616 1.95743 1.38323 1.96091 1.60850 1.18679 1.67085 1.20832 1.01598 0.89797 1.00858 0.89229 0.83533 0.78898 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.05 10.84 55.99 0.61 -15.44 15 2 C 0.07 1.52 5.40 -15.18 -0.08 1.44 15 3 Si 0.93 15.49 29.66 -169.99 -5.04 10.44 15 4 H -0.26 -4.31 7.11 56.52 0.40 -3.90 15 5 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 6 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 7 C -0.46 -10.13 9.29 -35.59 -0.33 -10.46 15 8 H 0.09 1.94 7.97 -52.49 -0.42 1.52 15 9 C 0.07 1.67 5.62 -106.80 -0.60 1.07 15 10 C -0.05 -1.17 8.82 -38.23 -0.34 -1.51 15 11 C -0.15 -3.02 6.34 -105.20 -0.67 -3.69 15 12 C 0.07 1.21 12.31 -15.01 -0.18 1.02 15 13 N -0.26 -4.92 12.53 31.95 0.40 -4.52 15 14 N -0.50 -9.96 7.13 32.52 0.23 -9.73 15 15 H 0.44 8.26 7.32 -182.84 -1.34 6.92 15 16 C 0.08 1.75 6.94 -83.97 -0.58 1.17 15 17 C 0.01 0.16 6.86 -80.17 -0.55 -0.39 15 18 N 0.01 0.27 4.98 33.85 0.17 0.44 15 19 O -0.21 -4.96 19.08 -31.57 -0.60 -5.56 15 20 O -0.25 -5.67 17.82 -31.57 -0.56 -6.23 15 21 C -0.11 -2.42 9.24 -39.19 -0.36 -2.78 15 22 H 0.30 5.52 8.27 -40.82 -0.34 5.19 15 23 H 0.15 3.09 6.05 -52.48 -0.32 2.78 15 24 H 0.19 2.53 8.06 -52.49 -0.42 2.10 15 25 H 0.14 2.93 7.49 -52.49 -0.39 2.54 15 LS Contribution 239.32 15.07 3.61 3.61 Total: -1.00 -25.12 239.32 -6.91 -32.03 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.02 Total: 9.09 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -3.70 Total: -14.14 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 1.41 Total: -29.24 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.16 Total: -11.79 kcal Atomic # 14 Polarization: 15.49 SS G_CDS: -5.04 Total: 10.44 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.12 -6.91 -32.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089197211.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.304 kcal (2) G-P(sol) polarization free energy of solvation -25.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds