Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30487 * 1 3 3 Si 1.86807 * 119.99534 * 2 1 4 4 H 1.48498 * 109.47048 * 274.98356 * 3 2 1 5 5 H 1.48500 * 109.47106 * 34.98979 * 3 2 1 6 6 H 1.48501 * 109.46681 * 154.98515 * 3 2 1 7 7 C 1.40518 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99954 * 186.07067 * 7 2 1 9 9 C 1.39999 * 120.00036 * 6.07316 * 7 2 1 10 10 N 1.32421 * 125.11725 * 354.22083 * 9 7 2 11 11 C 1.34013 * 108.94788 * 179.97438 * 10 9 7 12 12 C 1.40597 * 133.34135 * 180.29160 * 11 10 9 13 13 C 1.36061 * 119.99903 * 180.19816 * 12 11 10 14 14 C 1.40315 * 120.49633 * 359.45282 * 13 12 11 15 15 C 1.47537 * 119.86594 * 180.27847 * 14 13 12 16 16 O 1.21504 * 120.00201 * 180.02562 * 15 14 13 17 17 O 1.34753 * 120.00176 * 359.97438 * 15 14 13 18 18 C 1.39593 * 120.26730 * 0.30026 * 14 13 12 19 19 C 1.38161 * 119.68460 * 359.97438 * 18 14 13 20 20 O 1.35039 * 125.12293 * 174.20338 * 9 7 2 21 21 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.07995 * 119.99794 * 359.92995 * 12 11 10 23 23 H 1.07997 * 119.74790 * 179.73776 * 13 12 11 24 24 H 0.96701 * 116.99841 * 180.02562 * 17 15 14 25 25 H 1.08000 * 120.15721 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2388 1.6179 0.0000 4 1 2.3809 2.1074 -1.3948 5 1 1.4928 2.6200 0.8028 6 1 3.5850 1.4122 0.5920 7 6 2.0076 -1.2169 -0.0005 8 1 3.0830 -1.2194 0.0984 9 6 1.3135 -2.4259 -0.1294 10 7 -0.0048 -2.5493 -0.1478 11 6 -0.3187 -3.8449 -0.2846 12 6 -1.5388 -4.5386 -0.3674 13 6 -1.5437 -5.8924 -0.5033 14 6 -0.3373 -6.6055 -0.5733 15 6 -0.3589 -8.0727 -0.7269 16 8 0.6844 -8.6926 -0.7873 17 8 -1.5356 -8.7254 -0.7991 18 6 0.8833 -5.9323 -0.4979 19 6 0.8991 -4.5583 -0.3542 20 8 1.8876 -3.6418 -0.2539 21 1 -0.4851 0.8400 0.0004 22 1 -2.4721 -3.9974 -0.3189 23 1 -2.4833 -6.4216 -0.5623 24 1 -1.4990 -9.6865 -0.8991 25 1 1.8108 -6.4829 -0.5516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107707689.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = -71.314054 kcal Electronic energy + Delta-G solvation = -15182.263265 eV Core-core repulsion = 12319.643755 eV Total energy + Delta-G solvation = -2862.619510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53813 -39.65081 -36.68722 -35.62314 -34.45753 -32.82056 -29.84460 -29.54769 -27.09786 -23.33725 -22.24892 -20.88708 -20.45686 -17.93662 -17.82043 -16.92344 -16.46290 -15.38545 -15.30376 -14.98906 -14.71530 -13.88522 -13.39673 -13.14550 -12.56995 -12.23082 -11.99665 -11.70809 -11.49198 -11.13188 -11.11320 -10.67885 -10.49327 -10.34613 -10.11751 -9.56818 -8.59283 -8.03346 -7.58138 -7.19483 -5.19331 1.31471 2.18965 2.70145 2.80127 2.87497 3.04718 3.37495 3.54171 3.76647 4.26895 4.53608 4.98668 5.38676 5.56967 5.64370 5.93705 6.18928 6.28539 6.51325 6.60757 6.79083 6.89041 7.05227 7.17230 7.28008 7.56618 7.71365 7.93792 8.20329 8.36319 9.42167 9.69719 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.071181 B = 0.005807 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.267865 B = 4820.810607 C = 5200.622950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.064 3.936 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.387 4.387 8 H 0.107 0.893 9 C 0.352 3.648 10 N -0.542 5.542 11 C 0.145 3.855 12 C -0.156 4.156 13 C -0.042 4.042 14 C -0.215 4.215 15 C 0.538 3.462 16 O -0.542 6.542 17 O -0.518 6.518 18 C 0.002 3.998 19 C -0.085 4.085 20 O -0.253 6.253 21 H 0.291 0.709 22 H 0.123 0.877 23 H 0.127 0.873 24 H 0.404 0.596 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -3.423 -0.554 3.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.418 4.418 8 H 0.125 0.875 9 C 0.177 3.823 10 N -0.274 5.274 11 C 0.015 3.985 12 C -0.177 4.177 13 C -0.062 4.062 14 C -0.219 4.219 15 C 0.386 3.614 16 O -0.434 6.434 17 O -0.329 6.329 18 C -0.018 4.018 19 C -0.135 4.135 20 O -0.153 6.153 21 H 0.102 0.898 22 H 0.141 0.859 23 H 0.145 0.855 24 H 0.260 0.740 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.073 -2.382 -0.448 3.190 hybrid contribution 0.820 -0.567 -0.133 1.006 sum -1.253 -2.950 -0.581 3.257 Atomic orbital electron populations 1.69913 1.07677 1.30234 1.23248 1.26160 0.95283 1.01667 0.93522 0.85781 0.80211 0.78212 0.79768 1.18679 1.19312 1.17775 1.18785 0.95893 0.85934 1.41195 0.87492 1.22586 0.86570 0.83472 0.89709 1.71586 1.10699 1.12896 1.32215 1.20700 0.93645 0.91307 0.92833 1.19698 0.95440 0.92924 1.09613 1.20559 0.96554 0.93348 0.95778 1.17924 0.93697 0.88032 1.22232 1.20806 0.80248 0.88687 0.71646 1.90816 1.33934 1.69357 1.49326 1.84597 1.35528 1.26860 1.85933 1.19381 0.97224 0.88783 0.96394 1.19986 0.88313 0.91572 1.13669 1.84656 1.34839 1.16860 1.78956 0.89772 0.85917 0.85529 0.73955 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.72 11.86 55.58 0.66 -16.06 15 2 C 0.06 1.45 5.50 -17.26 -0.09 1.35 15 3 Si 0.94 16.20 29.57 -169.99 -5.03 11.18 15 4 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 5 H -0.27 -4.50 7.11 56.52 0.40 -4.10 15 6 H -0.25 -4.27 7.11 56.52 0.40 -3.87 15 7 C -0.39 -9.49 9.46 -38.06 -0.36 -9.85 15 8 H 0.11 2.37 7.86 -52.49 -0.41 1.96 15 9 C 0.35 9.48 7.68 -16.64 -0.13 9.35 15 10 N -0.54 -14.91 9.39 -11.01 -0.10 -15.01 15 11 C 0.14 3.63 7.22 -84.86 -0.61 3.02 15 12 C -0.16 -3.29 10.05 -39.47 -0.40 -3.69 15 13 C -0.04 -0.79 9.53 -39.58 -0.38 -1.17 15 14 C -0.22 -4.25 5.88 -104.82 -0.62 -4.87 15 15 C 0.54 9.56 8.26 34.52 0.29 9.85 15 16 O -0.54 -10.83 17.11 -19.27 -0.33 -11.16 15 17 O -0.52 -7.02 12.65 -40.64 -0.51 -7.54 15 18 C 0.00 0.04 9.60 -39.10 -0.38 -0.34 15 19 C -0.08 -2.08 7.41 -38.44 -0.29 -2.37 15 20 O -0.25 -6.59 10.83 1.18 0.01 -6.58 15 21 H 0.29 6.17 8.29 -40.82 -0.34 5.83 15 22 H 0.12 2.38 8.06 -52.49 -0.42 1.96 15 23 H 0.13 1.97 7.58 -52.49 -0.40 1.57 15 24 H 0.40 3.38 9.11 45.56 0.42 3.80 15 25 H 0.13 2.57 7.63 -52.49 -0.40 2.17 15 LS Contribution 241.85 15.07 3.64 3.64 Total: -1.00 -30.02 241.85 -4.97 -34.99 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -0.35 Total: 5.25 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.96 Total: 1.30 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.56 Total: -31.07 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.83 Total: -25.28 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.18 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.02 -4.97 -34.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107707689.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.324 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds