Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30487 * 1 3 3 Si 1.86807 * 119.99534 * 2 1 4 4 H 1.48498 * 109.47048 * 274.98356 * 3 2 1 5 5 H 1.48500 * 109.47106 * 34.98979 * 3 2 1 6 6 H 1.48501 * 109.46681 * 154.98515 * 3 2 1 7 7 C 1.40518 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99954 * 186.07067 * 7 2 1 9 9 C 1.39999 * 120.00036 * 6.07316 * 7 2 1 10 10 N 1.32421 * 125.11725 * 354.22083 * 9 7 2 11 11 C 1.34013 * 108.94788 * 179.97438 * 10 9 7 12 12 C 1.40597 * 133.34135 * 180.29160 * 11 10 9 13 13 C 1.36061 * 119.99903 * 180.19816 * 12 11 10 14 14 C 1.40315 * 120.49633 * 359.45282 * 13 12 11 15 15 C 1.47537 * 119.86594 * 180.27847 * 14 13 12 16 16 O 1.21504 * 120.00201 * 180.02562 * 15 14 13 17 17 O 1.34753 * 120.00176 * 359.97438 * 15 14 13 18 18 C 1.39593 * 120.26730 * 0.30026 * 14 13 12 19 19 C 1.38161 * 119.68460 * 359.97438 * 18 14 13 20 20 O 1.35039 * 125.12293 * 174.20338 * 9 7 2 21 21 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.07995 * 119.99794 * 359.92995 * 12 11 10 23 23 H 1.07997 * 119.74790 * 179.73776 * 13 12 11 24 24 H 0.96701 * 116.99841 * 180.02562 * 17 15 14 25 25 H 1.08000 * 120.15721 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2388 1.6179 0.0000 4 1 2.3809 2.1074 -1.3948 5 1 1.4928 2.6200 0.8028 6 1 3.5850 1.4122 0.5920 7 6 2.0076 -1.2169 -0.0005 8 1 3.0830 -1.2194 0.0984 9 6 1.3135 -2.4259 -0.1294 10 7 -0.0048 -2.5493 -0.1478 11 6 -0.3187 -3.8449 -0.2846 12 6 -1.5388 -4.5386 -0.3674 13 6 -1.5437 -5.8924 -0.5033 14 6 -0.3373 -6.6055 -0.5733 15 6 -0.3589 -8.0727 -0.7269 16 8 0.6844 -8.6926 -0.7873 17 8 -1.5356 -8.7254 -0.7991 18 6 0.8833 -5.9323 -0.4979 19 6 0.8991 -4.5583 -0.3542 20 8 1.8876 -3.6418 -0.2539 21 1 -0.4851 0.8400 0.0004 22 1 -2.4721 -3.9974 -0.3189 23 1 -2.4833 -6.4216 -0.5623 24 1 -1.4990 -9.6865 -0.8991 25 1 1.8108 -6.4829 -0.5516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107707689.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = -93.702727 kcal Electronic energy + Delta-G solvation = -15183.234111 eV Core-core repulsion = 12319.643755 eV Total energy + Delta-G solvation = -2863.590356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.37269 -41.07546 -38.34276 -36.95508 -36.22945 -34.64246 -31.56777 -31.29559 -28.84517 -24.95261 -23.99535 -22.63930 -22.09168 -19.62077 -19.43071 -18.45006 -18.10999 -17.12910 -17.03493 -16.45965 -16.31539 -15.43304 -15.02888 -14.81196 -14.14235 -13.80011 -13.60179 -13.26919 -13.08476 -12.83121 -12.50316 -12.17757 -12.07970 -12.00778 -11.62636 -11.23323 -10.49105 -9.76127 -9.37359 -8.88665 -7.05224 -0.35811 0.50286 1.20018 1.36970 1.57341 1.58623 1.90406 2.10420 2.13079 2.60643 2.82713 3.15506 3.67147 3.91605 4.15930 4.26129 4.57134 4.64421 4.81114 4.90691 5.21706 5.34931 5.41101 5.60668 5.68390 5.78509 5.97271 6.13812 6.37460 7.11122 7.55645 8.04745 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.071181 B = 0.005807 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.267865 B = 4820.810607 C = 5200.622950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.023 3.977 3 Si 1.023 2.977 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.245 1.245 7 C -0.411 4.411 8 H 0.121 0.879 9 C 0.319 3.681 10 N -0.580 5.580 11 C 0.108 3.892 12 C -0.159 4.159 13 C -0.022 4.022 14 C -0.207 4.207 15 C 0.552 3.448 16 O -0.563 6.563 17 O -0.499 6.499 18 C -0.003 4.003 19 C -0.115 4.115 20 O -0.269 6.269 21 H 0.301 0.699 22 H 0.138 0.862 23 H 0.171 0.829 24 H 0.432 0.568 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 -4.212 -0.734 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.203 4.203 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.168 1.168 7 C -0.442 4.442 8 H 0.139 0.861 9 C 0.143 3.857 10 N -0.313 5.313 11 C -0.018 4.018 12 C -0.180 4.180 13 C -0.042 4.042 14 C -0.210 4.210 15 C 0.400 3.600 16 O -0.457 6.457 17 O -0.312 6.312 18 C -0.023 4.023 19 C -0.165 4.165 20 O -0.170 6.170 21 H 0.113 0.887 22 H 0.156 0.844 23 H 0.189 0.811 24 H 0.293 0.707 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.903 -3.258 -0.632 4.410 hybrid contribution 0.922 -0.619 -0.103 1.116 sum -1.981 -3.877 -0.735 4.416 Atomic orbital electron populations 1.69978 1.09658 1.32004 1.23847 1.27364 0.96048 1.04865 0.92016 0.84588 0.78834 0.72594 0.80066 1.18011 1.18182 1.16794 1.19390 0.96860 0.86300 1.41693 0.86138 1.23162 0.87132 0.84205 0.91183 1.71483 1.11161 1.14365 1.34293 1.21210 0.95288 0.91026 0.94316 1.20034 0.94697 0.94029 1.09256 1.20947 0.97860 0.92266 0.93088 1.18291 0.93289 0.89747 1.19706 1.20298 0.80911 0.87760 0.71022 1.90831 1.35183 1.69630 1.50057 1.84507 1.32669 1.29270 1.84785 1.19608 0.98657 0.87734 0.96279 1.20387 0.88123 0.92452 1.15535 1.84593 1.35705 1.17221 1.79495 0.88715 0.84393 0.81150 0.70661 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.59 11.86 21.92 0.26 -36.33 15 2 C 0.02 1.06 5.50 85.45 0.47 1.53 15 3 Si 1.02 32.83 29.57 68.60 2.03 34.86 15 4 H -0.26 -7.90 7.11 99.48 0.71 -7.19 15 5 H -0.26 -7.75 7.11 99.48 0.71 -7.04 15 6 H -0.25 -7.41 7.11 99.48 0.71 -6.70 15 7 C -0.41 -20.97 9.46 23.25 0.22 -20.75 15 8 H 0.12 5.52 7.86 -2.91 -0.02 5.50 15 9 C 0.32 18.10 7.68 85.03 0.65 18.76 15 10 N -0.58 -33.41 9.39 -301.89 -2.83 -36.24 15 11 C 0.11 5.61 7.22 40.14 0.29 5.90 15 12 C -0.16 -6.60 10.05 22.34 0.22 -6.38 15 13 C -0.02 -0.76 9.53 22.27 0.21 -0.55 15 14 C -0.21 -7.70 5.88 -19.99 -0.12 -7.82 15 15 C 0.55 17.69 8.26 70.27 0.58 18.27 15 16 O -0.56 -20.97 17.11 19.82 0.34 -20.63 15 17 O -0.50 -10.96 12.65 -56.64 -0.72 -11.68 15 18 C 0.00 -0.15 9.60 22.58 0.22 0.07 15 19 C -0.11 -5.84 7.41 23.01 0.17 -5.67 15 20 O -0.27 -14.83 10.83 -18.68 -0.20 -15.04 15 21 H 0.30 13.05 8.29 -92.71 -0.77 12.28 15 22 H 0.14 5.20 8.06 -2.91 -0.02 5.18 15 23 H 0.17 4.39 7.58 -2.91 -0.02 4.37 15 24 H 0.43 4.90 9.11 -74.06 -0.67 4.23 15 25 H 0.13 5.40 7.63 -2.91 -0.02 5.38 15 Total: -1.00 -68.09 241.85 2.38 -65.71 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.59 Total: 16.00 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 2.92 Total: 3.35 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -2.57 Total: -72.57 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.58 Total: -47.35 kcal Atomic # 14 Polarization: 32.83 SS G_CDS: 2.03 Total: 34.86 kcal Total: -68.09 2.38 -65.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107707689.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.989 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds