Wall clock time and date at job start Mon Mar 30 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48503 * 109.47136 * 269.99845 * 3 2 1 5 5 H 1.48500 * 109.47246 * 29.99683 * 3 2 1 6 6 H 1.48498 * 109.47190 * 149.99685 * 3 2 1 7 7 C 1.39272 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99736 * 180.02562 * 7 2 1 9 9 N 1.37109 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.28744 * 123.57386 * 179.97438 * 9 7 2 11 11 C 1.32354 * 108.87135 * 180.02562 * 10 9 7 12 12 C 1.40507 * 136.41578 * 179.97438 * 11 10 9 13 13 C 1.36207 * 119.69747 * 179.97438 * 12 11 10 14 14 C 1.41051 * 121.42006 * 0.02624 * 13 12 11 15 15 C 1.36206 * 121.41908 * 0.02562 * 14 13 12 16 16 C 1.40505 * 119.70176 * 359.97438 * 15 14 13 17 17 N 1.28738 * 123.57688 * 0.02562 * 9 7 2 18 18 O 1.37066 * 107.85543 * 180.02562 * 14 13 12 19 19 C 1.44619 * 103.98819 * 337.31761 * 18 14 13 20 20 O 1.37068 * 130.72949 * 179.97438 * 13 12 11 21 21 H 0.97008 * 119.99758 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.15218 * 0.02562 * 12 11 10 23 23 H 1.08001 * 120.14738 * 179.97438 * 15 14 13 24 24 H 1.09002 * 110.86242 * 277.55193 * 19 18 14 25 25 H 1.09000 * 111.03718 * 153.98418 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.4921 2.0464 -1.4001 5 1 1.4420 2.6527 0.7000 6 1 3.5421 1.4402 0.7001 7 6 2.0069 -1.2061 0.0005 8 1 3.0869 -1.2061 0.0010 9 7 1.3214 -2.3935 0.0005 10 7 1.8943 -3.5464 0.0005 11 6 0.9633 -4.4871 0.0000 12 6 0.9358 -5.8919 -0.0007 13 6 -0.2603 -6.5435 -0.0006 14 6 -1.4818 -5.8382 -0.0004 15 6 -1.5155 -4.4765 -0.0007 16 6 -0.3127 -3.7504 -0.0008 17 7 0.0365 -2.4738 -0.0004 18 8 -2.4981 -6.7579 0.0002 19 6 -1.8888 -7.9526 -0.5408 20 8 -0.5489 -7.8835 -0.0017 21 1 -0.4850 0.8401 -0.0004 22 1 1.8589 -6.4526 -0.0005 23 1 -2.4626 -3.9574 -0.0009 24 1 -1.8705 -7.9198 -1.6302 25 1 -2.4029 -8.8474 -0.1899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107838802.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:20 Heat of formation + Delta-G solvation = 70.386774 kcal Electronic energy + Delta-G solvation = -15584.389623 eV Core-core repulsion = 12760.207473 eV Total energy + Delta-G solvation = -2824.182150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.93827 -41.10325 -35.78573 -35.54365 -33.75274 -31.60151 -30.18846 -28.80402 -26.67493 -25.00364 -22.90258 -22.04860 -20.08934 -18.69736 -18.19259 -16.89907 -16.42244 -15.61486 -15.23651 -14.85655 -14.67675 -14.49724 -13.45850 -13.28967 -13.23458 -12.21851 -12.16442 -11.95562 -11.49978 -11.45444 -11.42566 -10.77663 -10.22995 -9.71379 -9.42658 -9.34295 -9.08708 -7.67252 -7.11655 -7.10084 -4.94247 1.60827 2.28870 2.80912 2.81880 2.91261 3.44668 3.48883 3.65233 3.96256 4.55029 4.55630 4.63729 5.02754 5.14010 5.28227 5.31107 5.76307 5.84200 6.34859 6.51887 6.62614 6.65049 6.88368 6.98387 7.22493 7.50444 7.68334 7.80242 8.03014 8.78660 9.76443 9.99687 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.072286 B = 0.006403 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.254939 B = 4372.222557 C = 4732.310535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.043 3.957 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.273 4.273 8 H 0.141 0.859 9 N 0.115 4.885 10 N -0.392 5.392 11 C 0.007 3.993 12 C -0.063 4.063 13 C 0.012 3.988 14 C 0.001 3.999 15 C -0.048 4.048 16 C -0.014 4.014 17 N -0.292 5.292 18 O -0.316 6.316 19 C 0.210 3.790 20 O -0.317 6.317 21 H 0.289 0.711 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.073 0.927 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -3.991 -1.404 4.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.418 4.418 8 H 0.158 0.842 9 N 0.230 4.770 10 N -0.241 5.241 11 C -0.134 4.134 12 C -0.086 4.086 13 C -0.035 4.035 14 C -0.046 4.046 15 C -0.072 4.072 16 C -0.154 4.154 17 N -0.142 5.142 18 O -0.233 6.233 19 C 0.097 3.903 20 O -0.234 6.234 21 H 0.100 0.900 22 H 0.143 0.857 23 H 0.144 0.856 24 H 0.091 0.909 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.040 -3.178 -1.259 3.574 hybrid contribution -0.347 -0.348 -0.085 0.499 sum -1.388 -3.526 -1.344 4.021 Atomic orbital electron populations 1.70167 1.06797 1.29922 1.28160 1.26044 0.96028 1.01384 0.94698 0.85446 0.79543 0.77454 0.79744 1.18743 1.19392 1.17851 1.20557 0.93522 0.78109 1.49561 0.84156 1.44214 1.01186 1.04763 1.26837 1.74431 1.24019 0.90861 1.34802 1.20750 0.90954 0.93743 1.07948 1.17916 0.94762 0.89460 1.06493 1.18822 0.94058 0.81817 1.08765 1.18807 0.85119 0.90728 1.09921 1.18001 0.96081 0.88397 1.04681 1.21220 0.94167 0.90919 1.09140 1.75382 0.95333 1.14829 1.28668 1.87631 1.33127 1.21067 1.81470 1.25558 0.78073 0.89479 0.97148 1.87622 1.32617 1.21633 1.81492 0.89997 0.85739 0.85585 0.90904 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.84 11.68 55.51 0.65 -17.19 15 2 C 0.04 0.99 5.49 -17.50 -0.10 0.89 15 3 Si 0.96 16.44 29.55 -169.99 -5.02 11.42 15 4 H -0.26 -4.43 7.11 56.52 0.40 -4.03 15 5 H -0.27 -4.53 7.11 56.52 0.40 -4.13 15 6 H -0.25 -4.22 7.11 56.52 0.40 -3.82 15 7 C -0.27 -6.78 10.41 -14.81 -0.15 -6.93 15 8 H 0.14 3.13 7.83 -52.49 -0.41 2.72 15 9 N 0.11 3.15 4.00 31.62 0.13 3.28 15 10 N -0.39 -10.53 11.95 33.22 0.40 -10.13 15 11 C 0.01 0.18 7.60 -83.09 -0.63 -0.45 15 12 C -0.06 -1.40 10.07 -39.46 -0.40 -1.79 15 13 C 0.01 0.26 6.98 -39.25 -0.27 -0.01 15 14 C 0.00 0.02 6.98 -39.25 -0.27 -0.25 15 15 C -0.05 -1.11 10.07 -39.46 -0.40 -1.50 15 16 C -0.01 -0.36 7.60 -83.09 -0.63 -0.99 15 17 N -0.29 -8.18 9.69 33.22 0.32 -7.86 15 18 O -0.32 -5.84 11.54 -47.68 -0.55 -6.39 15 19 C 0.21 3.04 8.76 101.05 0.89 3.92 15 20 O -0.32 -5.78 11.54 -47.69 -0.55 -6.33 15 21 H 0.29 6.28 8.30 -40.82 -0.34 5.94 15 22 H 0.12 2.45 8.06 -52.49 -0.42 2.03 15 23 H 0.13 2.64 8.06 -52.49 -0.42 2.22 15 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.13 1.29 8.14 -51.93 -0.42 0.87 15 LS Contribution 233.81 15.07 3.52 3.52 Total: -1.00 -30.20 233.81 -4.31 -34.52 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -1.24 Total: 2.29 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.97 Total: -7.12 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 1.49 Total: -31.91 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.10 Total: -12.72 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.02 Total: 11.42 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.20 -4.31 -34.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107838802.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.903 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds