Wall clock time and date at job start Mon Mar 30 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46716 * 110.99807 * 2 1 4 4 C 1.53380 * 108.25142 * 75.24674 * 3 2 1 5 5 N 1.46700 * 108.27682 * 66.76867 * 4 3 2 6 6 C 1.46905 * 111.00429 * 75.43241 * 5 4 3 7 7 C 1.50697 * 109.46851 * 75.93147 * 6 5 4 8 8 H 1.07999 * 120.00448 * 5.52184 * 7 6 5 9 9 C 1.37888 * 119.99599 * 185.51687 * 7 6 5 10 10 N 1.31516 * 119.99743 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99769 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47047 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46810 * 119.99945 * 11 9 7 14 14 H 1.48501 * 109.46930 * 240.00197 * 11 9 7 15 15 C 1.39930 * 112.13759 * 310.64273 * 5 4 3 16 16 C 1.39221 * 117.93723 * 197.78185 * 15 5 4 17 17 C 1.38040 * 120.40283 * 180.28218 * 16 15 5 18 18 C 1.38269 * 120.02457 * 0.02562 * 17 16 15 19 19 C 1.38041 * 120.01459 * 359.88348 * 18 17 16 20 20 C 1.38953 * 122.49128 * 17.84233 * 15 5 4 21 21 H 1.08996 * 109.46692 * 60.00629 * 1 2 3 22 22 H 1.09002 * 109.46750 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47494 * 300.00279 * 1 2 3 24 24 H 1.09003 * 109.70388 * 315.55354 * 3 2 1 25 25 H 1.08997 * 109.70616 * 194.93948 * 3 2 1 26 26 H 1.09005 * 109.69947 * 186.46170 * 4 3 2 27 27 H 1.08996 * 109.70069 * 307.02636 * 4 3 2 28 28 H 1.08997 * 109.47418 * 195.93743 * 6 5 4 29 29 H 1.09003 * 109.46677 * 315.93042 * 6 5 4 30 30 H 0.97006 * 119.99159 * 180.02562 * 10 9 7 31 31 H 1.07996 * 119.79536 * 0.27757 * 16 15 5 32 32 H 1.07999 * 119.99120 * 180.02562 * 17 16 15 33 33 H 1.07993 * 119.98782 * 179.89878 * 18 17 16 34 34 H 1.08008 * 119.79615 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9948 1.3697 0.0000 4 6 1.8206 1.9511 1.4086 5 7 2.6961 1.2105 2.3235 6 6 4.0982 1.6146 2.1532 7 6 4.3165 2.9568 2.8026 8 1 3.5212 3.4185 3.3690 9 6 5.5317 3.5955 2.6739 10 7 6.5001 3.0334 1.9839 11 14 5.8026 5.2590 3.4794 12 1 4.5670 5.6704 4.1929 13 1 6.9242 5.1631 4.4479 14 1 6.1320 6.2653 2.4383 15 6 2.5531 -0.1746 2.1847 16 6 3.0191 -0.9851 3.2162 17 6 2.9091 -2.3584 3.1297 18 6 2.3339 -2.9374 2.0136 19 6 1.8671 -2.1424 0.9863 20 6 1.9704 -0.7563 1.0654 21 1 -0.3632 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.4425 1.9754 -0.7186 25 1 3.0521 1.3576 -0.2645 26 1 2.0976 3.0054 1.4078 27 1 0.7830 1.8441 1.7246 28 1 4.7488 0.8750 2.6199 29 1 4.3300 1.6831 1.0904 30 1 7.3551 3.4826 1.8936 31 1 3.4694 -0.5366 4.0894 32 1 3.2725 -2.9808 3.9341 33 1 2.2497 -4.0119 1.9459 34 1 1.4188 -2.5985 0.1159 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108144196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:17 Heat of formation + Delta-G solvation = 45.804109 kcal Electronic energy + Delta-G solvation = -16446.782956 eV Core-core repulsion = 13958.626922 eV Total energy + Delta-G solvation = -2488.156034 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43473 -36.64216 -35.48407 -32.60870 -29.99104 -29.67789 -28.27164 -26.48774 -24.51146 -23.26924 -22.47497 -20.98513 -19.01101 -16.84534 -16.14341 -15.78931 -15.76714 -14.64766 -14.24110 -14.11836 -13.88633 -13.42090 -13.16532 -12.79717 -12.17478 -12.11093 -11.98528 -11.82870 -11.27252 -11.02437 -10.91937 -10.75067 -10.66013 -10.48852 -9.98605 -9.65202 -9.23127 -8.53870 -8.49448 -7.53668 -7.09968 -6.10339 -4.13505 1.81378 1.90697 3.26299 3.34115 3.38805 4.03472 4.27298 4.36960 4.73629 5.20660 5.24870 5.31837 5.42483 5.47854 5.53531 5.64546 5.75235 5.81682 5.90269 5.96488 6.01653 6.25227 6.40269 6.53195 6.68558 6.75019 6.95890 7.10696 7.18769 7.25667 7.28925 7.65725 7.76599 7.98897 8.07653 8.45554 8.94240 9.51195 10.99612 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.007906 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.554177 B = 3540.652939 C = 4072.497693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.495 5.495 3 C 0.016 3.984 4 C 0.028 3.972 5 N -0.491 5.491 6 C 0.198 3.802 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.899 3.101 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.095 3.905 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.107 4.107 20 C 0.048 3.952 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -7.241 -2.288 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.212 5.212 3 C -0.113 4.113 4 C -0.102 4.102 5 N -0.206 5.206 6 C 0.076 3.924 7 C -0.552 4.552 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.534 5.534 11 Si 0.727 3.273 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.006 4.006 16 C -0.131 4.131 17 C -0.141 4.141 18 C -0.162 4.162 19 C -0.127 4.127 20 C -0.051 4.051 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.627 -7.182 -2.341 12.237 hybrid contribution 0.300 1.117 0.301 1.195 sum -9.327 -6.065 -2.040 11.311 Atomic orbital electron populations 1.22464 0.86223 1.02142 1.00835 1.59245 1.07672 1.13835 1.40418 1.22895 1.02208 0.87582 0.98566 1.22693 0.96584 1.00532 0.90378 1.59289 1.11429 1.00190 1.49686 1.19959 0.79244 0.96687 0.96508 1.21182 0.98575 1.02938 1.32463 0.91676 1.24999 0.95916 0.98156 0.95393 1.69976 1.04075 1.38700 1.40625 0.86418 0.78258 0.83498 0.79130 1.19634 1.20926 1.20999 1.19260 0.99540 0.90394 0.91407 1.20951 1.01018 0.92843 0.98292 1.20893 1.00472 0.94453 0.98257 1.20775 1.01714 0.98934 0.94739 1.20720 1.01727 0.91521 0.98738 1.18875 1.04749 0.92900 0.88577 0.91240 0.91345 0.94914 0.90055 0.89268 0.88365 0.91868 0.95018 0.97214 0.92802 0.85647 0.86517 0.86675 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.28 60.07 0.56 0.95 16 2 N -0.50 -8.37 4.85 -178.67 -0.87 -9.24 16 3 C 0.02 0.29 5.86 -3.73 -0.02 0.26 16 4 C 0.03 0.53 5.76 -3.74 -0.02 0.51 16 5 N -0.49 -10.93 4.51 -172.21 -0.78 -11.70 16 6 C 0.20 5.13 4.55 -4.97 -0.02 5.11 16 7 C -0.51 -14.16 8.54 -34.44 -0.29 -14.46 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.06 1.60 5.46 -17.81 -0.10 1.50 16 10 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 11 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.09 1.94 5.13 -83.53 -0.43 1.51 16 16 C -0.11 -2.10 9.10 -39.29 -0.36 -2.46 16 17 C -0.12 -1.93 10.04 -39.64 -0.40 -2.33 16 18 C -0.14 -2.11 10.04 -39.64 -0.40 -2.51 16 19 C -0.11 -1.71 9.24 -39.29 -0.36 -2.07 16 20 C 0.05 0.88 5.16 -83.53 -0.43 0.45 16 21 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 22 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 23 H 0.03 0.45 6.66 -51.93 -0.35 0.11 16 24 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 25 H 0.09 1.82 6.51 -51.93 -0.34 1.48 16 26 H 0.10 1.99 7.37 -51.93 -0.38 1.61 16 27 H 0.06 1.12 6.61 -51.93 -0.34 0.78 16 28 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 29 H 0.01 0.28 6.37 -51.93 -0.33 -0.05 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 32 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.63 8.03 -52.48 -0.42 1.21 16 LS Contribution 274.52 15.07 4.14 4.14 Total: -1.00 -29.71 274.52 -8.65 -38.36 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.59 Total: 1.15 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.28 Total: -13.53 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.91 Total: -46.40 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.71 -8.65 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108144196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.168 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds