Wall clock time and date at job start Mon Mar 30 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30000 * 126.20847 * 2 1 4 4 O 1.21275 * 110.49133 * 179.97438 * 3 2 1 5 5 C 1.34055 * 109.75113 * 0.02562 * 4 3 2 6 6 N 1.37365 * 126.66768 * 179.97438 * 5 4 3 7 7 S 1.65608 * 120.00202 * 0.02562 * 6 5 4 8 8 O 1.42093 * 106.40109 * 178.26994 * 7 6 5 9 9 O 1.42107 * 106.40103 * 311.18979 * 7 6 5 10 10 C 1.76202 * 107.21687 * 64.72718 * 7 6 5 11 11 H 1.08001 * 119.99832 * 359.97438 * 10 7 6 12 12 C 1.37874 * 119.99924 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00002 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00069 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47123 * 90.00026 * 14 12 10 16 16 H 1.48496 * 109.47232 * 210.00275 * 14 12 10 17 17 H 1.48501 * 109.46875 * 330.00040 * 14 12 10 18 18 N 1.32140 * 106.66321 * 0.23069 * 5 4 3 19 19 H 1.09008 * 109.47356 * 89.97550 * 1 2 3 20 20 H 1.09003 * 109.47252 * 209.96717 * 1 2 3 21 21 H 1.08992 * 109.47347 * 329.97327 * 1 2 3 22 22 H 0.97000 * 120.00455 * 179.74350 * 6 5 4 23 23 H 0.97004 * 120.00200 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2749 1.0489 0.0000 4 8 3.4424 0.7204 0.0005 5 6 3.5367 -0.6168 0.0003 6 7 4.6935 -1.3576 0.0003 7 16 6.1642 -0.5964 0.0011 8 8 7.1468 -1.6220 0.0420 9 8 6.1082 0.3859 -1.0243 10 6 6.2967 0.2807 1.5235 11 1 5.4893 0.2440 2.2399 12 6 7.4307 1.0147 1.7998 13 7 8.4132 1.0606 0.9269 14 14 7.5714 1.9440 3.4142 15 1 8.1914 1.0655 4.4386 16 1 8.4161 3.1496 3.2193 17 1 6.2187 2.3554 3.8680 18 7 2.3005 -1.0838 -0.0054 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3634 -0.8903 0.5133 21 1 -0.3633 0.8897 0.5142 22 1 4.6490 -2.3265 0.0039 23 1 9.2112 1.5767 1.1214 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131054208.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:26 Heat of formation + Delta-G solvation = -17.724538 kcal Electronic energy + Delta-G solvation = -14624.715428 eV Core-core repulsion = 11796.323342 eV Total energy + Delta-G solvation = -2828.392086 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 233.030 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.03014 -36.06634 -35.73583 -35.25430 -34.40907 -33.28366 -31.01479 -28.80187 -26.36559 -23.53910 -22.18879 -19.28612 -18.47780 -17.84646 -17.53297 -16.66681 -16.09368 -15.10882 -14.28950 -13.97152 -13.68213 -13.46793 -12.79448 -12.42422 -12.09074 -11.99048 -11.54068 -11.30464 -11.13369 -10.76010 -10.69891 -10.66851 -10.64704 -10.60184 -9.39840 -9.18139 -8.72697 -6.89570 -5.55348 1.50997 1.65895 2.59584 2.72722 3.00487 3.07871 3.15239 3.87545 4.03156 4.36394 4.47749 4.77498 5.28128 5.44396 5.53424 5.54959 5.86817 6.02564 6.18600 6.40285 7.05899 7.14190 7.73013 8.57502 8.69109 10.05857 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.010062 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.444610 B = 2781.955829 C = 3302.654755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.182 3.818 3 N -0.390 5.390 4 O 0.075 5.925 5 C 0.445 3.555 6 N -0.986 5.986 7 S 2.678 3.322 8 O -0.972 6.972 9 O -0.969 6.969 10 C -1.009 5.009 11 H 0.107 0.893 12 C 0.136 3.864 13 N -0.840 5.840 14 Si 0.928 3.072 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.260 1.260 18 N -0.526 5.526 19 H 0.086 0.914 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.441 0.559 23 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 -2.306 0.987 10.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 N -0.108 5.108 4 O 0.026 5.974 5 C 0.134 3.866 6 N -0.740 5.740 7 S 2.779 3.221 8 O -0.962 6.962 9 O -0.959 6.959 10 C -1.143 5.143 11 H 0.125 0.875 12 C -0.084 4.084 13 N -0.469 5.469 14 Si 0.752 3.248 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.184 1.184 18 N -0.273 5.273 19 H 0.104 0.896 20 H 0.107 0.893 21 H 0.103 0.897 22 H 0.279 0.721 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.611 -1.641 0.151 9.751 hybrid contribution 0.225 0.035 1.316 1.336 sum -9.386 -1.606 1.468 9.635 Atomic orbital electron populations 1.20071 0.83139 1.04331 1.03985 1.25500 1.00063 0.83781 0.99882 1.74589 0.88494 1.22716 1.25028 1.85597 1.22483 1.21025 1.68313 1.23631 0.88589 0.82271 0.92130 1.53787 1.18220 1.18360 1.83611 1.02069 0.69041 0.73660 0.77315 1.93453 1.53088 1.60247 1.89371 1.93456 1.83328 1.59201 1.59913 1.30179 1.11977 1.47197 1.24994 0.87517 1.24739 0.92561 0.92468 0.98621 1.69864 1.06552 1.35656 1.34864 0.86022 0.79476 0.78885 0.80464 1.18959 1.19652 1.18417 1.72253 0.97508 1.28006 1.29484 0.89555 0.89278 0.89656 0.72060 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 36.01 0.38 -0.23 14 2 C 0.18 3.07 8.20 -156.48 -1.28 1.79 14 3 N -0.39 -7.72 12.14 31.15 0.38 -7.34 14 4 O 0.07 1.65 10.55 12.36 0.13 1.78 14 5 C 0.45 9.07 8.85 -87.55 -0.78 8.29 14 6 N -0.99 -19.41 5.81 29.62 0.17 -19.24 14 7 S 2.68 67.27 4.80 -107.50 -0.52 66.75 14 8 O -0.97 -26.08 18.02 -57.17 -1.03 -27.11 14 9 O -0.97 -27.05 17.31 -61.05 -1.06 -28.11 14 10 C -1.01 -26.58 9.66 30.60 0.30 -26.28 14 11 H 0.11 2.60 7.81 -52.49 -0.41 2.19 14 12 C 0.14 3.62 5.46 -17.82 -0.10 3.52 14 13 N -0.84 -23.49 13.19 55.43 0.73 -22.76 14 14 Si 0.93 19.96 29.54 -169.99 -5.02 14.94 14 15 H -0.26 -5.45 7.11 56.52 0.40 -5.05 14 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 14 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 14 18 N -0.53 -9.65 11.59 -13.05 -0.15 -9.80 14 19 H 0.09 0.78 8.14 -51.92 -0.42 0.36 14 20 H 0.09 0.81 8.14 -51.93 -0.42 0.39 14 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 14 22 H 0.44 6.93 8.95 -34.47 -0.31 6.62 14 23 H 0.30 7.38 8.31 -40.82 -0.34 7.04 14 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -33.18 236.45 -5.40 -38.59 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -1.12 Total: 1.65 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.48 Total: -12.91 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 1.13 Total: -59.13 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -1.96 Total: -53.44 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 67.27 SS G_CDS: -0.52 Total: 66.75 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -33.18 -5.40 -38.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131054208.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.862 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds