Wall clock time and date at job start Mon Mar 30 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30000 * 126.20847 * 2 1 4 4 O 1.21275 * 110.49133 * 179.97438 * 3 2 1 5 5 C 1.34055 * 109.75113 * 0.02562 * 4 3 2 6 6 N 1.37365 * 126.66768 * 179.97438 * 5 4 3 7 7 S 1.65608 * 120.00202 * 0.02562 * 6 5 4 8 8 O 1.42093 * 106.40109 * 178.26994 * 7 6 5 9 9 O 1.42107 * 106.40103 * 311.18979 * 7 6 5 10 10 C 1.76202 * 107.21687 * 64.72718 * 7 6 5 11 11 H 1.08001 * 119.99832 * 359.97438 * 10 7 6 12 12 C 1.37874 * 119.99924 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00002 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00069 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47123 * 90.00026 * 14 12 10 16 16 H 1.48496 * 109.47232 * 210.00275 * 14 12 10 17 17 H 1.48501 * 109.46875 * 330.00040 * 14 12 10 18 18 N 1.32140 * 106.66321 * 0.23069 * 5 4 3 19 19 H 1.09008 * 109.47356 * 89.97550 * 1 2 3 20 20 H 1.09003 * 109.47252 * 209.96717 * 1 2 3 21 21 H 1.08992 * 109.47347 * 329.97327 * 1 2 3 22 22 H 0.97000 * 120.00455 * 179.74350 * 6 5 4 23 23 H 0.97004 * 120.00200 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2749 1.0489 0.0000 4 8 3.4424 0.7204 0.0005 5 6 3.5367 -0.6168 0.0003 6 7 4.6935 -1.3576 0.0003 7 16 6.1642 -0.5964 0.0011 8 8 7.1468 -1.6220 0.0420 9 8 6.1082 0.3859 -1.0243 10 6 6.2967 0.2807 1.5235 11 1 5.4893 0.2440 2.2399 12 6 7.4307 1.0147 1.7998 13 7 8.4132 1.0606 0.9269 14 14 7.5714 1.9440 3.4142 15 1 8.1914 1.0655 4.4386 16 1 8.4161 3.1496 3.2193 17 1 6.2187 2.3554 3.8680 18 7 2.3005 -1.0838 -0.0054 19 1 -0.3634 0.0004 -1.0277 20 1 -0.3634 -0.8903 0.5133 21 1 -0.3633 0.8897 0.5142 22 1 4.6490 -2.3265 0.0039 23 1 9.2112 1.5767 1.1214 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131054208.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:26 Heat of formation + Delta-G solvation = -46.498322 kcal Electronic energy + Delta-G solvation = -14625.963153 eV Core-core repulsion = 11796.323342 eV Total energy + Delta-G solvation = -2829.639811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 233.030 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.51301 -37.84292 -37.58158 -36.78132 -36.50507 -35.29009 -32.42450 -29.95990 -28.40739 -25.03062 -23.69747 -21.19034 -20.13274 -19.49632 -19.17674 -18.57209 -17.71762 -17.04323 -16.18297 -15.89524 -14.95501 -14.42614 -14.15825 -13.89482 -13.82628 -13.58251 -13.32586 -13.06331 -12.95154 -12.78814 -12.74217 -12.34846 -12.12031 -12.06016 -11.30083 -11.15036 -10.32132 -8.87194 -7.63013 -0.38820 0.10581 1.09944 1.20201 1.33715 1.35767 1.51172 2.14978 2.46364 2.54565 2.97272 3.17816 3.39673 4.01164 4.29043 4.51928 4.69132 4.69632 4.91810 5.15873 5.17716 5.52646 5.73751 6.66808 7.06682 8.11331 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.010062 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.444610 B = 2781.955829 C = 3302.654755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.195 3.805 3 N -0.412 5.412 4 O 0.036 5.964 5 C 0.432 3.568 6 N -0.972 5.972 7 S 2.697 3.303 8 O -0.996 6.996 9 O -1.005 7.005 10 C -1.029 5.029 11 H 0.119 0.881 12 C 0.079 3.921 13 N -0.883 5.883 14 Si 0.992 3.008 15 H -0.248 1.248 16 H -0.258 1.258 17 H -0.254 1.254 18 N -0.518 5.518 19 H 0.110 0.890 20 H 0.111 0.889 21 H 0.103 0.897 22 H 0.457 0.543 23 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 -2.264 2.197 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 N -0.135 5.135 4 O -0.007 6.007 5 C 0.120 3.880 6 N -0.731 5.731 7 S 2.798 3.202 8 O -0.986 6.986 9 O -0.995 6.995 10 C -1.164 5.164 11 H 0.137 0.863 12 C -0.136 4.136 13 N -0.514 5.514 14 Si 0.809 3.191 15 H -0.172 1.172 16 H -0.182 1.182 17 H -0.178 1.178 18 N -0.264 5.264 19 H 0.128 0.872 20 H 0.129 0.871 21 H 0.122 0.878 22 H 0.300 0.700 23 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.273 -1.635 1.344 11.470 hybrid contribution 0.592 -0.045 0.888 1.068 sum -10.681 -1.680 2.232 11.040 Atomic orbital electron populations 1.20465 0.78680 1.06334 1.06103 1.26659 1.02225 0.82437 0.96578 1.74620 0.88038 1.23763 1.27114 1.85575 1.23923 1.21774 1.69396 1.23860 0.89082 0.82161 0.92897 1.53007 1.17222 1.19114 1.83743 1.01227 0.69264 0.72974 0.76723 1.93411 1.54931 1.60739 1.89527 1.93406 1.84397 1.60539 1.61131 1.30523 1.12668 1.47631 1.25556 0.86256 1.25926 0.92005 0.93211 1.02482 1.69931 1.07527 1.36890 1.37047 0.85100 0.80020 0.78083 0.75873 1.17214 1.18236 1.17788 1.72322 0.96693 1.28439 1.28993 0.87158 0.87073 0.87829 0.70016 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.51 71.24 0.75 -0.28 14 2 C 0.20 6.16 8.20 138.50 1.14 7.30 14 3 N -0.41 -15.92 12.14 -58.83 -0.71 -16.64 14 4 O 0.04 1.58 10.55 75.53 0.80 2.38 14 5 C 0.43 17.38 8.85 179.27 1.59 18.97 14 6 N -0.97 -38.24 5.81 -171.19 -0.99 -39.23 14 7 S 2.70 137.63 4.80 -56.49 -0.27 137.36 14 8 O -1.00 -54.38 18.02 -128.00 -2.31 -56.69 14 9 O -1.01 -57.62 17.31 -124.29 -2.15 -59.77 14 10 C -1.03 -54.41 9.66 67.73 0.65 -53.75 14 11 H 0.12 5.79 7.81 -2.91 -0.02 5.77 14 12 C 0.08 4.19 5.46 84.65 0.46 4.65 14 13 N -0.88 -49.90 13.19 21.45 0.28 -49.62 14 14 Si 0.99 39.87 29.54 68.60 2.03 41.90 14 15 H -0.25 -9.27 7.11 99.48 0.71 -8.56 14 16 H -0.26 -9.73 7.11 99.48 0.71 -9.03 14 17 H -0.25 -9.88 7.11 99.48 0.71 -9.17 14 18 N -0.52 -18.11 11.59 -311.99 -3.62 -21.72 14 19 H 0.11 1.52 8.14 -2.38 -0.02 1.50 14 20 H 0.11 1.54 8.14 -2.39 -0.02 1.52 14 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 14 22 H 0.46 14.19 8.95 -96.75 -0.87 13.33 14 23 H 0.30 15.35 8.31 -92.71 -0.77 14.58 14 Total: -1.00 -71.75 236.45 -1.96 -73.71 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.40 Total: 11.43 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.59 Total: -23.11 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.04 Total: -127.21 kcal Atomic # 8 Polarization: -110.42 SS G_CDS: -3.66 Total: -114.08 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: 137.63 SS G_CDS: -0.27 Total: 137.36 kcal Total: -71.75 -1.96 -73.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131054208.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.211 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds