Wall clock time and date at job start Mon Mar 30 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31263 * 1 3 3 Si 1.86799 * 120.00046 * 2 1 4 4 H 1.48503 * 109.46947 * 274.09853 * 3 2 1 5 5 H 1.48500 * 109.47218 * 34.10207 * 3 2 1 6 6 H 1.48497 * 109.47109 * 154.10162 * 3 2 1 7 7 C 1.39044 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00265 * 340.80780 * 7 2 1 9 9 N 1.37345 * 119.99919 * 160.80562 * 7 2 1 10 10 C 1.36944 * 124.90128 * 338.50063 * 9 7 2 11 11 C 1.34254 * 109.19515 * 179.97438 * 10 9 7 12 12 C 1.47072 * 106.59054 * 0.02562 * 11 10 9 13 13 C 1.46384 * 126.99607 * 180.02562 * 12 11 10 14 14 O 1.21362 * 119.99885 * 180.02562 * 13 12 11 15 15 C 1.50701 * 120.00020 * 359.74153 * 13 12 11 16 16 F 1.39900 * 109.47091 * 180.02562 * 15 13 12 17 17 F 1.39905 * 109.47192 * 300.00589 * 15 13 12 18 18 F 1.39898 * 109.46906 * 60.00197 * 15 13 12 19 19 C 1.35649 * 124.90797 * 158.80719 * 9 7 2 20 20 H 0.97002 * 119.99873 * 0.02562 * 1 2 3 21 21 H 1.07998 * 125.40268 * 359.97438 * 10 9 7 22 22 H 1.08008 * 126.70809 * 179.97438 * 11 10 9 23 23 H 1.08004 * 125.99289 * 0.02562 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.4075 2.0964 -1.3965 5 1 1.4902 2.6261 0.7850 6 1 3.5848 1.4167 0.6115 7 6 2.0078 -1.2042 0.0005 8 1 1.5128 -2.1133 0.3084 9 7 3.3240 -1.2375 -0.3905 10 6 3.9325 -0.2939 -1.1745 11 6 5.2173 -0.6364 -1.3605 12 6 5.4253 -1.8974 -0.6327 13 6 6.6681 -2.6650 -0.5378 14 8 6.6970 -3.6964 0.1010 15 6 7.9101 -2.1777 -1.2386 16 9 8.9598 -3.0720 -1.0030 17 9 7.6677 -2.0956 -2.6140 18 9 8.2556 -0.9132 -0.7497 19 6 4.2073 -2.2127 -0.0608 20 1 -0.4850 0.8401 -0.0004 21 1 3.4548 0.5861 -1.5791 22 1 5.9539 -0.0927 -1.9335 23 1 3.9965 -3.0818 0.5447 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132382238.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:11 Heat of formation + Delta-G solvation = -151.816439 kcal Electronic energy + Delta-G solvation = -16080.432733 eV Core-core repulsion = 12672.465637 eV Total energy + Delta-G solvation = -3407.967096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.23510 -48.75783 -48.71333 -42.02992 -40.01065 -35.53133 -32.95243 -30.32611 -29.33146 -26.73076 -23.63735 -22.29230 -20.91012 -20.15187 -19.65256 -19.48281 -18.17400 -17.92418 -16.51533 -15.95325 -15.85048 -15.55977 -15.42679 -15.14363 -15.02774 -14.88315 -14.86298 -14.83489 -14.49094 -14.31082 -14.03668 -12.99838 -12.84777 -12.65664 -11.89184 -11.28537 -11.16489 -9.98132 -9.19688 -8.96433 -6.63368 -0.11895 1.11544 1.27332 1.33026 1.39170 1.54619 1.97416 2.05578 2.34084 2.56505 2.80570 2.98139 3.26291 3.87075 4.23302 4.33408 4.47703 4.92973 5.07722 5.25443 5.65321 5.91885 6.00989 6.14355 6.74687 7.02541 8.13971 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.049363 B = 0.007613 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.086760 B = 3677.235975 C = 3983.131183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.041 3.959 3 Si 0.948 3.052 4 H -0.244 1.244 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.382 4.382 8 H 0.104 0.896 9 N -0.252 5.252 10 C -0.096 4.096 11 C -0.141 4.141 12 C -0.317 4.317 13 C 0.403 3.597 14 O -0.458 6.458 15 C 0.440 3.560 16 F -0.172 7.172 17 F -0.164 7.164 18 F -0.164 7.164 19 C 0.033 3.967 20 H 0.299 0.701 21 H 0.161 0.839 22 H 0.167 0.833 23 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 2.099 -2.903 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.169 1.169 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.509 4.509 8 H 0.122 0.878 9 N 0.091 4.909 10 C -0.223 4.223 11 C -0.163 4.163 12 C -0.325 4.325 13 C 0.282 3.718 14 O -0.336 6.336 15 C 0.384 3.616 16 F -0.153 7.153 17 F -0.145 7.145 18 F -0.146 7.146 19 C -0.114 4.114 20 H 0.110 0.890 21 H 0.178 0.822 22 H 0.184 0.816 23 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.629 1.748 -2.526 10.107 hybrid contribution 0.008 0.564 -0.028 0.565 sum 9.636 2.312 -2.555 10.234 Atomic orbital electron populations 1.69682 1.07884 1.31532 1.38957 1.26065 0.96033 1.02570 0.92428 0.85778 0.79530 0.77309 0.80348 1.16922 1.20046 1.17562 1.19601 0.83673 0.98558 1.49048 0.87827 1.40441 1.07680 1.14996 1.27832 1.21872 0.95275 0.99561 1.05587 1.22049 0.95518 0.95796 1.02912 1.20120 0.93319 1.02343 1.16755 1.21585 0.86829 0.84796 0.78600 1.90590 1.84885 1.22838 1.35255 1.20682 0.86088 0.76236 0.78550 1.93201 1.59890 1.68023 1.94235 1.93228 1.94303 1.95981 1.30977 1.93225 1.93008 1.40762 1.87561 1.22340 0.87676 0.97149 1.04233 0.89032 0.82180 0.81598 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.74 13.95 21.67 0.30 -42.44 14 2 C 0.04 2.00 5.44 84.97 0.46 2.46 14 3 Si 0.95 37.14 24.66 68.60 1.69 38.83 14 4 H -0.24 -8.69 6.67 99.48 0.66 -8.02 14 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 14 6 H -0.25 -10.10 6.71 99.48 0.67 -9.43 14 7 C -0.38 -19.09 10.41 84.02 0.87 -18.21 14 8 H 0.10 5.50 8.06 -2.92 -0.02 5.47 14 9 N -0.25 -11.51 2.70 -348.61 -0.94 -12.46 14 10 C -0.10 -3.96 8.35 82.98 0.69 -3.27 14 11 C -0.14 -5.20 10.31 23.68 0.24 -4.96 14 12 C -0.32 -12.44 6.22 -18.85 -0.12 -12.56 14 13 C 0.40 14.61 6.67 27.81 0.19 14.80 14 14 O -0.46 -18.26 17.18 -3.28 -0.06 -18.32 14 15 C 0.44 13.63 3.05 71.24 0.22 13.85 14 16 F -0.17 -5.29 16.92 44.97 0.76 -4.53 14 17 F -0.16 -4.82 17.08 44.97 0.77 -4.05 14 18 F -0.16 -4.85 17.06 44.97 0.77 -4.08 14 19 C 0.03 1.38 11.16 84.09 0.94 2.32 14 20 H 0.30 13.52 8.31 -92.71 -0.77 12.75 14 21 H 0.16 6.20 4.40 -2.91 -0.01 6.19 14 22 H 0.17 5.01 8.06 -2.91 -0.02 4.98 14 23 H 0.17 6.78 8.06 -2.91 -0.02 6.76 14 Total: -1.00 -51.55 228.54 7.97 -43.57 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.18 Total: 9.04 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.50 Total: -5.57 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.64 Total: -54.89 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.06 Total: -18.32 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 2.30 Total: -12.66 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.69 Total: 38.83 kcal Total: -51.55 7.97 -43.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132382238.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.245 kcal (2) G-P(sol) polarization free energy of solvation -51.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds