Wall clock time and date at job start Mon Mar 30 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48503 * 109.46947 * 240.00065 * 3 2 1 5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47088 * 119.99832 * 3 2 1 7 7 C 1.40076 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.39913 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.38289 * 125.40840 * 180.02562 * 9 7 2 11 11 C 1.36805 * 114.19847 * 180.02562 * 10 9 7 12 12 C 1.34532 * 115.34354 * 359.97438 * 11 10 9 13 13 S 1.76206 * 124.92249 * 179.97438 * 12 11 10 14 14 N 1.65598 * 107.21773 * 90.00402 * 13 12 11 15 15 O 1.42105 * 106.39924 * 203.54154 * 13 12 11 16 16 O 1.42094 * 106.40414 * 336.46166 * 13 12 11 17 17 S 1.75790 * 110.14745 * 0.02562 * 12 11 10 18 18 H 0.96996 * 119.99983 * 0.02562 * 1 2 3 19 19 H 1.07999 * 122.89506 * 0.26606 * 10 9 7 20 20 H 1.08004 * 122.32384 * 179.97438 * 11 10 9 21 21 H 0.96995 * 120.00091 * 149.99255 * 14 13 12 22 22 H 0.97007 * 119.99632 * 329.99913 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0091 -1.2131 0.0005 8 1 3.0890 -1.2131 0.0010 9 6 1.3095 -2.4248 0.0016 10 6 1.8849 -3.6822 0.0028 11 6 0.9836 -4.7114 0.0031 12 6 -0.3104 -4.3435 0.0029 13 16 -1.6758 -5.4574 0.0026 14 7 -2.0559 -5.7673 1.5843 15 8 -2.7766 -4.7427 -0.5421 16 8 -1.1966 -6.6794 -0.5417 17 16 -0.4416 -2.5906 0.0014 18 1 -0.4850 0.8400 -0.0004 19 1 2.9536 -3.8382 0.0071 20 1 1.2897 -5.7471 0.0036 21 1 -2.9712 -5.9717 1.8320 22 1 -1.3633 -5.7441 2.2631 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133912453.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:29 Heat of formation + Delta-G solvation = -82.374650 kcal Electronic energy + Delta-G solvation = -12118.348946 eV Core-core repulsion = 9697.613540 eV Total energy + Delta-G solvation = -2420.735406 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.997 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.31418 -35.89962 -34.88386 -34.20774 -32.49279 -29.44699 -25.60075 -22.37440 -19.09491 -18.67070 -18.14651 -16.83402 -16.45841 -15.61417 -15.03454 -14.55851 -13.92980 -13.26169 -12.60448 -12.06899 -11.86207 -11.49155 -11.38810 -11.29310 -11.22329 -11.09587 -10.71925 -10.45441 -10.01192 -9.87142 -9.66249 -9.08524 -7.98289 -7.36500 -6.93242 -5.02417 1.54566 2.18693 2.75407 2.80590 2.83639 3.39555 3.48098 3.73490 3.83506 4.30802 4.62902 4.76828 5.79843 6.38350 6.52304 6.57809 6.89540 7.19831 7.36700 7.61690 7.71997 7.74957 8.17002 8.20079 9.46234 Molecular weight = 233.00amu Principal moments of inertia in cm(-1) A = 0.059637 B = 0.008053 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.396064 B = 3476.213424 C = 3762.892687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.356 4.356 8 H 0.102 0.898 9 C 0.042 3.958 10 C -0.344 4.344 11 C 0.046 3.954 12 C -0.972 4.972 13 S 2.730 3.270 14 N -1.259 6.259 15 O -0.990 6.990 16 O -0.997 6.997 17 S 0.212 5.788 18 H 0.307 0.693 19 H 0.108 0.892 20 H 0.106 0.894 21 H 0.407 0.593 22 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 0.166 3.867 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.393 4.393 8 H 0.120 0.880 9 C -0.082 4.082 10 C -0.368 4.368 11 C 0.015 3.985 12 C -1.180 5.180 13 S 2.825 3.175 14 N -0.927 5.927 15 O -0.980 6.980 16 O -0.987 6.987 17 S 0.471 5.529 18 H 0.120 0.880 19 H 0.126 0.874 20 H 0.124 0.876 21 H 0.234 0.766 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.983 0.805 2.926 3.625 hybrid contribution 2.057 -0.021 0.749 2.189 sum 0.074 0.784 3.675 3.758 Atomic orbital electron populations 1.68780 1.07917 1.31925 1.29812 1.26441 0.95256 1.03371 0.92855 0.85708 0.79669 0.77412 0.80587 1.18170 1.19461 1.18193 1.19484 0.96004 0.88815 1.34958 0.88033 1.22326 0.96722 0.95874 0.93250 1.20076 0.98369 0.91263 1.27110 1.18977 0.90695 0.97975 0.90877 1.34170 1.15691 1.17124 1.51017 0.99850 0.72879 0.73076 0.71729 1.53466 1.18531 1.91069 1.29680 1.93492 1.53444 1.74163 1.76932 1.93476 1.82346 1.45978 1.76876 1.84457 1.03090 0.90613 1.74773 0.87994 0.87392 0.87583 0.76562 0.76185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.25 10.65 55.56 0.59 -16.66 14 2 C 0.05 0.98 5.50 -17.27 -0.09 0.89 14 3 Si 0.94 15.99 29.56 -169.99 -5.03 10.96 14 4 H -0.26 -4.33 7.11 56.52 0.40 -3.93 14 5 H -0.27 -4.44 7.11 56.52 0.40 -4.04 14 6 H -0.26 -4.29 7.11 56.52 0.40 -3.89 14 7 C -0.36 -8.39 9.29 -38.27 -0.36 -8.75 14 8 H 0.10 2.20 7.85 -52.49 -0.41 1.79 14 9 C 0.04 1.05 6.19 -38.94 -0.24 0.81 14 10 C -0.34 -8.33 10.20 -40.08 -0.41 -8.74 14 11 C 0.05 1.09 9.79 -41.41 -0.41 0.68 14 12 C -0.97 -22.85 6.59 29.42 0.19 -22.66 14 13 S 2.73 56.75 6.42 -107.50 -0.69 56.06 14 14 N -1.26 -19.36 9.52 60.35 0.57 -18.79 14 15 O -0.99 -23.20 17.89 -57.17 -1.02 -24.22 14 16 O -1.00 -22.88 17.79 -57.17 -1.02 -23.90 14 17 S 0.21 5.31 20.12 -107.50 -2.16 3.15 14 18 H 0.31 6.19 8.30 -40.82 -0.34 5.85 14 19 H 0.11 2.41 8.06 -52.49 -0.42 1.99 14 20 H 0.11 2.25 8.05 -52.48 -0.42 1.83 14 21 H 0.41 5.13 8.96 -34.47 -0.31 4.82 14 22 H 0.41 5.54 8.96 -34.47 -0.31 5.23 14 LS Contribution 231.03 15.07 3.48 3.48 Total: -1.00 -30.45 231.03 -7.59 -38.04 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -1.01 Total: 9.64 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: -1.31 Total: -37.77 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 1.17 Total: -35.44 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.04 Total: -48.12 kcal Atomic # 14 Polarization: 15.99 SS G_CDS: -5.03 Total: 10.96 kcal Atomic # 16 Polarization: 62.06 SS G_CDS: -2.85 Total: 59.21 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.45 -7.59 -38.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133912453.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.337 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds