Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99958 * 2 1 4 4 C 1.50698 * 109.46837 * 270.00018 * 3 2 1 5 5 H 1.07999 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99782 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99689 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00211 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47147 * 89.99570 * 8 6 4 10 10 H 1.48491 * 109.47306 * 210.00303 * 8 6 4 11 11 H 1.48507 * 109.46920 * 330.00226 * 8 6 4 12 12 C 1.38997 * 120.00010 * 179.97438 * 2 1 3 13 13 C 1.39137 * 119.69672 * 5.00103 * 12 2 1 14 14 C 1.38228 * 118.92699 * 179.97438 * 13 12 2 15 15 C 1.38991 * 118.67421 * 0.02562 * 14 13 12 16 16 C 1.38027 * 119.47935 * 0.02562 * 15 14 13 17 17 N 1.32226 * 119.69484 * 185.02131 * 12 2 1 18 18 C 1.51503 * 109.60840 * 179.97438 * 16 15 14 19 19 C 1.54588 * 105.22715 * 17.22449 * 18 16 15 20 20 C 1.51257 * 130.55511 * 179.97438 * 15 14 13 21 21 H 1.09002 * 109.46985 * 270.00080 * 1 2 3 22 22 H 1.09000 * 109.46903 * 29.99744 * 1 2 3 23 23 H 1.08995 * 109.47017 * 150.00353 * 1 2 3 24 24 H 1.08999 * 109.47269 * 29.99862 * 3 2 1 25 25 H 1.09002 * 109.47169 * 150.00399 * 3 2 1 26 26 H 0.97005 * 119.99893 * 179.97438 * 7 6 4 27 27 H 1.08006 * 120.53701 * 359.97099 * 13 12 2 28 28 H 1.07998 * 120.66392 * 179.97438 * 14 13 12 29 29 H 1.09008 * 110.29283 * 136.14374 * 18 16 15 30 30 H 1.08999 * 110.29275 * 258.17596 * 18 16 15 31 31 H 1.09002 * 110.91437 * 215.45740 * 19 18 16 32 32 H 1.08994 * 110.86032 * 91.80980 * 19 18 16 33 33 H 1.09002 * 110.31642 * 281.76711 * 20 15 14 34 34 H 1.09004 * 110.31190 * 43.84954 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2568 -2.9127 8 14 3.7338 3.9288 -0.2531 9 1 5.1069 3.5068 0.1236 10 1 3.7497 5.3553 -0.6649 11 1 2.8273 3.7597 0.9110 12 6 2.1600 -1.2037 0.0005 13 6 1.4619 -2.4028 -0.1043 14 6 2.1691 -3.5905 -0.1027 15 6 3.5540 -3.5419 0.0044 16 6 4.1849 -2.3185 0.1063 17 7 3.4784 -1.1989 0.1011 18 6 5.6820 -2.5258 0.2112 19 6 5.9270 -3.9719 -0.2772 20 6 4.5777 -4.6550 0.0338 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6084 2.0284 0.5138 25 1 3.1500 1.1384 0.5138 26 1 3.8233 4.0827 -3.0900 27 1 0.3849 -2.4054 -0.1855 28 1 1.6557 -4.5373 -0.1822 29 1 6.2076 -1.8168 -0.4287 30 1 6.0076 -2.4140 1.2454 31 1 6.7362 -4.4401 0.2833 32 1 6.1340 -3.9904 -1.3471 33 1 4.6056 -5.1176 1.0204 34 1 4.3474 -5.4011 -0.7269 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134280194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = 45.043326 kcal Electronic energy + Delta-G solvation = -15976.723133 eV Core-core repulsion = 13488.534109 eV Total energy + Delta-G solvation = -2488.189024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12241 -37.09097 -34.50564 -32.45769 -32.06590 -28.94186 -27.94958 -27.38258 -25.01407 -23.12224 -21.34006 -20.48255 -19.97962 -16.84636 -16.43386 -16.20344 -15.40744 -14.55454 -14.38975 -14.16744 -13.56677 -13.13461 -12.76885 -12.55651 -12.46901 -12.31570 -11.83699 -11.67409 -11.50718 -11.21659 -10.97422 -10.85203 -10.76270 -10.45508 -10.14707 -9.52896 -9.19475 -8.72783 -8.57150 -8.46044 -6.64479 -6.04249 -4.01768 1.82370 2.04054 3.31653 3.37474 3.39634 3.74455 4.43272 4.46016 4.59694 4.81767 5.16020 5.22017 5.28012 5.42543 5.43945 5.62806 5.75964 5.86150 5.89054 5.91168 5.98773 6.01672 6.17367 6.26273 6.32724 6.38466 6.57010 6.70244 6.84138 6.97320 7.23751 7.67051 7.80677 8.19680 8.57636 8.93794 9.01764 9.56642 11.09402 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.007989 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.008749 B = 3504.124966 C = 4167.638916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.591 5.591 3 C 0.224 3.776 4 C -0.523 4.523 5 H 0.072 0.928 6 C 0.071 3.929 7 N -0.901 5.901 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.428 3.572 13 C -0.259 4.259 14 C -0.023 4.023 15 C -0.242 4.242 16 C 0.173 3.827 17 N -0.524 5.524 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.061 4.061 21 H 0.041 0.959 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.024 0.976 25 H 0.042 0.958 26 H 0.263 0.737 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -13.573 7.522 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.300 5.300 3 C 0.103 3.897 4 C -0.562 4.562 5 H 0.090 0.910 6 C -0.131 4.131 7 N -0.540 5.540 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.191 3.809 13 C -0.285 4.285 14 C -0.049 4.049 15 C -0.247 4.247 16 C 0.032 3.968 17 N -0.241 5.241 18 C -0.110 4.110 19 C -0.156 4.156 20 C -0.099 4.099 21 H 0.059 0.941 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.102 -12.379 7.482 14.465 hybrid contribution -0.208 -0.012 0.392 0.444 sum -0.106 -12.391 7.875 14.682 Atomic orbital electron populations 1.21580 0.79912 1.02767 1.00125 1.46613 1.04492 1.03846 1.75069 1.19639 0.92423 0.79689 0.97981 1.21395 1.36449 1.06891 0.91488 0.91018 1.24853 0.95387 0.97353 0.95489 1.69909 1.41819 1.23587 1.18647 0.86845 0.80097 0.79677 0.83018 1.19913 1.21210 1.19155 1.18109 0.87546 0.86097 0.89119 1.21274 1.00519 0.91998 1.14692 1.20569 0.92442 0.97303 0.94552 1.20925 0.94238 0.96809 1.12776 1.21402 0.95909 0.87539 0.91967 1.66338 1.06359 1.31001 1.20384 1.21009 0.90392 0.97226 1.02347 1.22327 0.97039 0.94649 1.01545 1.20694 0.92458 0.95671 1.01093 0.94051 0.90647 0.92146 0.95825 0.94041 0.92689 0.85427 0.86198 0.89853 0.89834 0.90653 0.90938 0.91372 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.28 59.85 0.62 2.32 16 2 N -0.59 -13.05 2.97 -183.15 -0.54 -13.59 16 3 C 0.22 5.65 4.29 -5.19 -0.02 5.63 16 4 C -0.52 -15.38 9.94 -34.44 -0.34 -15.72 16 5 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 8 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 12 C 0.43 9.24 7.37 -155.17 -1.14 8.09 16 13 C -0.26 -4.59 9.27 -39.25 -0.36 -4.96 16 14 C -0.02 -0.36 10.16 -39.31 -0.40 -0.76 16 15 C -0.24 -3.93 6.16 -104.15 -0.64 -4.57 16 16 C 0.17 3.26 7.31 -82.03 -0.60 2.66 16 17 N -0.52 -11.89 9.07 -8.37 -0.08 -11.97 16 18 C -0.07 -1.06 6.78 -26.65 -0.18 -1.24 16 19 C -0.12 -1.35 7.10 -25.16 -0.18 -1.53 16 20 C -0.06 -0.74 6.76 -26.88 -0.18 -0.93 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 23 H 0.06 0.90 5.98 -51.93 -0.31 0.59 16 24 H 0.02 0.58 7.13 -51.93 -0.37 0.21 16 25 H 0.04 1.10 6.73 -51.93 -0.35 0.75 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.13 1.93 6.03 -52.48 -0.32 1.61 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 280.47 15.07 4.23 4.23 Total: -1.00 -33.64 280.47 -8.56 -42.20 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.74 Total: -1.71 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.54 Total: -9.00 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.15 Total: -53.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.64 -8.56 -42.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134280194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.248 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds