Wall clock time and date at job start Mon Mar 30 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99958 * 2 1 4 4 C 1.50698 * 109.46837 * 270.00018 * 3 2 1 5 5 H 1.07999 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99782 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99689 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00211 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47147 * 89.99570 * 8 6 4 10 10 H 1.48491 * 109.47306 * 210.00303 * 8 6 4 11 11 H 1.48507 * 109.46920 * 330.00226 * 8 6 4 12 12 C 1.38997 * 120.00010 * 179.97438 * 2 1 3 13 13 C 1.39137 * 119.69672 * 5.00103 * 12 2 1 14 14 C 1.38228 * 118.92699 * 179.97438 * 13 12 2 15 15 C 1.38991 * 118.67421 * 0.02562 * 14 13 12 16 16 C 1.38027 * 119.47935 * 0.02562 * 15 14 13 17 17 N 1.32226 * 119.69484 * 185.02131 * 12 2 1 18 18 C 1.51503 * 109.60840 * 179.97438 * 16 15 14 19 19 C 1.54588 * 105.22715 * 17.22449 * 18 16 15 20 20 C 1.51257 * 130.55511 * 179.97438 * 15 14 13 21 21 H 1.09002 * 109.46985 * 270.00080 * 1 2 3 22 22 H 1.09000 * 109.46903 * 29.99744 * 1 2 3 23 23 H 1.08995 * 109.47017 * 150.00353 * 1 2 3 24 24 H 1.08999 * 109.47269 * 29.99862 * 3 2 1 25 25 H 1.09002 * 109.47169 * 150.00399 * 3 2 1 26 26 H 0.97005 * 119.99893 * 179.97438 * 7 6 4 27 27 H 1.08006 * 120.53701 * 359.97099 * 13 12 2 28 28 H 1.07998 * 120.66392 * 179.97438 * 14 13 12 29 29 H 1.09008 * 110.29283 * 136.14374 * 18 16 15 30 30 H 1.08999 * 110.29275 * 258.17596 * 18 16 15 31 31 H 1.09002 * 110.91437 * 215.45740 * 19 18 16 32 32 H 1.08994 * 110.86032 * 91.80980 * 19 18 16 33 33 H 1.09002 * 110.31642 * 281.76711 * 20 15 14 34 34 H 1.09004 * 110.31190 * 43.84954 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2568 -2.9127 8 14 3.7338 3.9288 -0.2531 9 1 5.1069 3.5068 0.1236 10 1 3.7497 5.3553 -0.6649 11 1 2.8273 3.7597 0.9110 12 6 2.1600 -1.2037 0.0005 13 6 1.4619 -2.4028 -0.1043 14 6 2.1691 -3.5905 -0.1027 15 6 3.5540 -3.5419 0.0044 16 6 4.1849 -2.3185 0.1063 17 7 3.4784 -1.1989 0.1011 18 6 5.6820 -2.5258 0.2112 19 6 5.9270 -3.9719 -0.2772 20 6 4.5777 -4.6550 0.0338 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6084 2.0284 0.5138 25 1 3.1500 1.1384 0.5138 26 1 3.8233 4.0827 -3.0900 27 1 0.3849 -2.4054 -0.1855 28 1 1.6557 -4.5373 -0.1822 29 1 6.2076 -1.8168 -0.4287 30 1 6.0076 -2.4140 1.2454 31 1 6.7362 -4.4401 0.2833 32 1 6.1340 -3.9904 -1.3471 33 1 4.6056 -5.1176 1.0204 34 1 4.3474 -5.4011 -0.7269 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134280194.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:06 Heat of formation + Delta-G solvation = 23.960895 kcal Electronic energy + Delta-G solvation = -15977.637336 eV Core-core repulsion = 13488.534109 eV Total energy + Delta-G solvation = -2489.103227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.46575 -38.49356 -35.95947 -34.57847 -33.44543 -30.76526 -29.27804 -28.64435 -26.56124 -24.73864 -22.90457 -21.56095 -21.48907 -19.09809 -17.88934 -17.67981 -16.52791 -16.36387 -15.81135 -15.68413 -15.08248 -14.78990 -14.30366 -13.94483 -13.74820 -13.63820 -13.42701 -13.19545 -13.00653 -12.71948 -12.43138 -12.29818 -12.06280 -11.97783 -11.82062 -11.69951 -10.83066 -10.57767 -10.21044 -9.93002 -8.34543 -8.15673 -6.37545 0.45674 0.69251 1.30857 1.34504 1.43885 2.27863 2.30746 3.00592 3.06132 3.32230 3.72371 4.09874 4.17810 4.23345 4.27332 4.37478 4.49182 4.60757 4.68651 4.81254 4.89274 4.91241 4.96089 4.98661 5.07356 5.13810 5.18661 5.31974 5.40080 5.47965 5.51733 5.87220 6.05130 6.39365 6.61300 6.68079 7.25281 7.52151 8.83623 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.007989 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.008749 B = 3504.124966 C = 4167.638916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.613 5.613 3 C 0.239 3.761 4 C -0.528 4.528 5 H 0.020 0.980 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.244 1.244 12 C 0.390 3.610 13 C -0.258 4.258 14 C -0.024 4.024 15 C -0.233 4.233 16 C 0.132 3.868 17 N -0.577 5.577 18 C -0.076 4.076 19 C -0.107 4.107 20 C -0.057 4.057 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.026 0.974 26 H 0.267 0.733 27 H 0.153 0.847 28 H 0.164 0.836 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -15.789 9.372 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.324 5.324 3 C 0.116 3.884 4 C -0.567 4.567 5 H 0.038 0.962 6 C -0.187 4.187 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.168 1.168 12 C 0.155 3.845 13 C -0.283 4.283 14 C -0.049 4.049 15 C -0.238 4.238 16 C -0.007 4.007 17 N -0.295 5.295 18 C -0.114 4.114 19 C -0.145 4.145 20 C -0.095 4.095 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.170 0.830 28 H 0.181 0.819 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.151 -14.652 9.341 17.377 hybrid contribution -0.212 0.518 -0.262 0.618 sum -0.061 -14.134 9.078 16.799 Atomic orbital electron populations 1.21758 0.77507 1.03225 1.01927 1.46620 1.05991 1.02965 1.76854 1.19192 0.92534 0.81866 0.94766 1.21598 1.36212 1.06394 0.92467 0.96185 1.25847 0.95413 0.98892 0.98590 1.70066 1.43081 1.24529 1.21287 0.85671 0.79613 0.77674 0.79683 1.19751 1.20026 1.16777 1.18557 0.87869 0.87043 0.91051 1.21582 1.01827 0.91279 1.13600 1.21097 0.92552 0.98318 0.92956 1.21548 0.95280 0.97331 1.09672 1.22173 0.97885 0.87855 0.92795 1.66243 1.07614 1.33639 1.21954 1.21191 0.88018 0.99239 1.02915 1.22365 0.98067 0.92111 1.01971 1.20821 0.90910 0.94590 1.03166 0.91385 0.91836 0.90074 0.94715 0.95570 0.92361 0.82983 0.81867 0.91754 0.88612 0.87248 0.91027 0.88981 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.28 127.77 1.31 4.62 16 2 N -0.61 -27.57 2.97 -733.37 -2.18 -29.75 16 3 C 0.24 12.41 4.29 85.63 0.37 12.77 16 4 C -0.53 -32.49 9.94 25.60 0.25 -32.23 16 5 H 0.02 1.39 8.06 -2.91 -0.02 1.36 16 6 C 0.01 0.60 5.47 84.66 0.46 1.07 16 7 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 8 Si 0.95 46.13 27.47 68.60 1.88 48.01 16 9 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.24 -10.88 6.54 99.48 0.65 -10.23 16 12 C 0.39 17.06 7.37 133.12 0.98 18.04 16 13 C -0.26 -8.78 9.27 22.48 0.21 -8.57 16 14 C -0.02 -0.69 10.16 22.45 0.23 -0.46 16 15 C -0.23 -7.03 6.16 -19.56 -0.12 -7.15 16 16 C 0.13 4.96 7.31 42.68 0.31 5.28 16 17 N -0.58 -26.94 9.07 -180.39 -1.64 -28.58 16 18 C -0.08 -2.18 6.78 30.64 0.21 -1.98 16 19 C -0.11 -2.14 7.10 31.61 0.22 -1.91 16 20 C -0.06 -1.16 6.76 30.50 0.21 -0.95 16 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 23 H 0.08 2.32 5.98 -2.39 -0.01 2.31 16 24 H 0.03 1.70 7.13 -2.39 -0.02 1.68 16 25 H 0.03 1.43 6.73 -2.39 -0.02 1.41 16 26 H 0.27 16.12 8.31 -92.70 -0.77 15.35 16 27 H 0.15 4.23 6.03 -2.91 -0.02 4.21 16 28 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -78.05 280.47 4.04 -74.01 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.03 Total: 9.21 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.65 Total: -11.47 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -3.52 Total: -119.76 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.01 kcal Total: -78.05 4.04 -74.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134280194.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.970 kcal (2) G-P(sol) polarization free energy of solvation -78.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds