Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29409 * 1 3 3 Si 1.86792 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47549 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47159 * 120.00463 * 3 2 1 6 6 H 1.48506 * 109.46941 * 240.00030 * 3 2 1 7 7 C 1.46570 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 163.39284 * 7 2 1 9 9 N 1.33947 * 119.99920 * 343.38300 * 7 2 1 10 10 C 1.37291 * 126.48101 * 329.58938 * 9 7 2 11 11 N 1.29744 * 109.96369 * 179.81381 * 10 9 7 12 12 C 1.36183 * 109.88658 * 0.46169 * 11 10 9 13 13 C 1.39537 * 133.38709 * 179.68070 * 12 11 10 14 14 C 1.37890 * 119.78981 * 180.02562 * 13 12 11 15 15 C 1.38571 * 120.48797 * 359.95420 * 14 13 12 16 16 C 1.38147 * 120.38049 * 0.04502 * 15 14 13 17 17 N 1.48012 * 120.08327 * 179.97438 * 16 15 14 18 18 O 1.31705 * 119.99915 * 139.26431 * 17 16 15 19 19 O 1.31698 * 120.00053 * 319.26677 * 17 16 15 20 20 C 1.38544 * 119.83208 * 359.97438 * 16 15 14 21 21 H 0.97002 * 120.00227 * 174.40423 * 1 2 3 22 22 H 1.07994 * 125.02171 * 0.02562 * 10 9 7 23 23 H 1.08003 * 120.10513 * 0.06499 * 13 12 11 24 24 H 1.08000 * 119.75882 * 179.97438 * 14 13 12 25 25 H 1.07996 * 119.81098 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2280 1.6177 0.0000 4 1 1.2630 2.7465 0.0006 5 1 3.0818 1.6963 1.2124 6 1 3.0818 1.6964 -1.2126 7 6 2.0269 -1.2694 -0.0006 8 1 3.0731 -1.2888 -0.2679 9 7 1.3990 -2.4053 0.3307 10 6 0.3476 -2.5319 1.2043 11 7 -0.0145 -3.7752 1.2845 12 6 0.7764 -4.5407 0.4825 13 6 0.8227 -5.9074 0.2050 14 6 1.7647 -6.3961 -0.6755 15 6 2.6656 -5.5397 -1.2880 16 6 2.6320 -4.1843 -1.0231 17 7 3.5978 -3.2756 -1.6806 18 8 3.2003 -2.1004 -2.1228 19 8 4.8546 -3.6423 -1.8235 20 6 1.6918 -3.6777 -0.1405 21 1 -0.4850 -0.8360 -0.0819 22 1 -0.1126 -1.7166 1.7426 23 1 0.1226 -6.5802 0.6778 24 1 1.8003 -7.4540 -0.8897 25 1 3.3985 -5.9342 -1.9762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138042030.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = 92.104215 kcal Electronic energy + Delta-G solvation = -16018.347683 eV Core-core repulsion = 13195.107272 eV Total energy + Delta-G solvation = -2823.240411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50732 -38.15372 -36.78590 -34.46428 -33.39524 -32.31176 -30.24211 -28.88831 -25.90118 -24.98933 -22.30724 -21.82243 -20.67794 -19.06748 -17.36970 -17.13565 -16.43627 -15.77530 -15.20883 -15.01713 -14.53820 -14.25288 -13.61913 -13.08952 -12.72756 -11.95600 -11.80936 -11.50021 -11.23477 -10.87018 -10.57367 -10.48055 -10.31740 -10.23093 -9.67279 -9.48739 -9.37057 -8.20527 -7.92699 -7.53384 -4.76360 0.17974 1.54415 1.89495 2.10427 2.94097 2.99828 3.21330 3.42586 3.59721 3.94676 4.16738 4.33549 4.85836 5.13981 5.34067 5.40577 5.67958 5.86095 6.04805 6.15369 6.45898 6.51557 6.63688 6.93402 7.15998 7.23156 7.40067 7.72031 8.00907 8.53621 8.72471 9.54545 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.011929 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.995693 B = 2346.685856 C = 3266.687567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.040 3.960 3 Si 1.093 2.907 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.403 4.403 8 H 0.123 0.877 9 N -0.258 5.258 10 C 0.186 3.814 11 N -0.503 5.503 12 C 0.028 3.972 13 C -0.007 4.007 14 C -0.169 4.169 15 C -0.050 4.050 16 C 0.036 3.964 17 N -0.024 5.024 18 O -0.143 6.143 19 O -0.260 6.260 20 C -0.009 4.009 21 H 0.295 0.705 22 H 0.204 0.796 23 H 0.132 0.868 24 H 0.138 0.862 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -4.298 0.519 4.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.183 4.183 3 Si 0.913 3.087 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.538 4.538 8 H 0.140 0.860 9 N 0.076 4.924 10 C -0.093 4.093 11 N -0.223 5.223 12 C -0.097 4.097 13 C -0.027 4.027 14 C -0.191 4.191 15 C -0.071 4.071 16 C -0.053 4.053 17 N 0.438 4.562 18 O -0.341 6.341 19 O -0.427 6.427 20 C -0.131 4.131 21 H 0.109 0.891 22 H 0.220 0.780 23 H 0.150 0.850 24 H 0.156 0.844 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.577 -3.299 1.324 3.601 hybrid contribution 1.005 -1.049 -0.860 1.688 sum 0.428 -4.348 0.464 4.394 Atomic orbital electron populations 1.69996 1.08266 1.33847 1.28824 1.28926 0.95218 1.03360 0.90817 0.83202 0.75248 0.71233 0.79055 1.19228 1.19485 1.18707 1.22516 0.98519 0.83887 1.48829 0.85961 1.41045 1.22336 1.04639 1.24413 1.25218 0.93190 0.95387 0.95457 1.70248 1.26695 1.01526 1.23817 1.18698 0.96059 0.93623 1.01369 1.20467 0.96175 0.91854 0.94173 1.20513 0.98054 0.99302 1.01244 1.20581 0.98602 0.88779 0.99166 1.19006 0.94805 0.88873 1.02634 1.50308 1.02892 1.02634 1.00391 1.96249 1.84544 1.05119 1.48142 1.96155 0.97912 1.81233 1.67358 1.18075 1.02578 0.89282 1.03132 0.89054 0.77996 0.84983 0.84421 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.79 12.76 55.99 0.71 -18.08 15 2 C 0.04 0.93 5.45 -15.21 -0.08 0.85 15 3 Si 1.09 20.33 30.06 -169.99 -5.11 15.22 15 4 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 7 C -0.40 -10.19 8.18 -13.27 -0.11 -10.30 15 8 H 0.12 3.25 5.92 -52.48 -0.31 2.94 15 9 N -0.26 -6.45 2.75 -59.29 -0.16 -6.62 15 10 C 0.19 4.30 10.19 -88.90 -0.91 3.40 15 11 N -0.50 -11.44 11.26 -11.81 -0.13 -11.57 15 12 C 0.03 0.61 7.22 -84.64 -0.61 -0.01 15 13 C -0.01 -0.12 10.10 -39.22 -0.40 -0.52 15 14 C -0.17 -2.59 10.02 -39.59 -0.40 -2.99 15 15 C -0.05 -0.91 9.72 -39.49 -0.38 -1.29 15 16 C 0.04 0.83 6.52 -79.87 -0.52 0.31 15 17 N -0.02 -0.59 4.59 34.00 0.16 -0.43 15 18 O -0.14 -3.74 15.96 -31.57 -0.50 -4.24 15 19 O -0.26 -6.32 19.77 -31.57 -0.62 -6.94 15 20 C -0.01 -0.23 6.70 -83.78 -0.56 -0.79 15 21 H 0.29 7.22 6.46 -40.82 -0.26 6.96 15 22 H 0.20 4.32 7.23 -52.49 -0.38 3.94 15 23 H 0.13 1.85 8.06 -52.48 -0.42 1.42 15 24 H 0.14 1.52 8.06 -52.49 -0.42 1.09 15 25 H 0.14 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 236.34 15.07 3.56 3.56 Total: -1.00 -28.50 236.34 -7.09 -35.59 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -1.02 Total: 4.86 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.97 Total: -11.34 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.57 Total: -36.70 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.13 Total: -11.19 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.11 Total: 15.22 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.50 -7.09 -35.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138042030.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.690 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds