Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47351 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.46991 * 29.99929 * 3 2 1 6 6 H 1.48496 * 109.47037 * 149.99598 * 3 2 1 7 7 C 1.38813 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00062 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99579 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65165 * 359.97016 * 9 7 2 11 11 C 1.54905 * 104.92834 * 155.84166 * 10 9 7 12 12 C 1.55448 * 101.45165 * 37.00468 * 11 10 9 13 13 C 1.47026 * 125.64258 * 180.02562 * 9 7 2 14 14 H 1.08998 * 109.88350 * 300.60561 * 13 9 7 15 15 C 1.52998 * 109.88558 * 61.61802 * 13 9 7 16 16 Br 1.96596 * 109.47081 * 298.54672 * 15 13 9 17 17 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 18 18 H 1.09002 * 110.36926 * 274.73635 * 10 9 7 19 19 H 1.08995 * 110.36556 * 36.94919 * 10 9 7 20 20 H 1.09002 * 111.00852 * 155.13877 * 11 10 9 21 21 H 1.09004 * 111.00578 * 278.99532 * 11 10 9 22 22 H 1.08998 * 110.70855 * 206.14575 * 12 11 10 23 23 H 1.08997 * 110.70436 * 82.89324 * 12 11 10 24 24 H 1.09004 * 109.47335 * 58.54118 * 15 13 9 25 25 H 1.08999 * 109.47333 * 178.54386 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1414 -2.5332 -0.0016 11 6 -0.4042 -3.9309 -0.6155 12 6 0.7785 -4.7524 -0.0300 13 6 1.9319 -3.7275 -0.0017 14 1 2.5609 -3.8496 -0.8835 15 6 2.7686 -3.9201 1.2646 16 35 4.2193 -2.5937 1.2996 17 1 -0.4850 0.8400 -0.0004 18 1 -0.5272 -2.4875 1.0168 19 1 -0.5993 -1.7573 -0.6151 20 1 -1.3623 -4.3301 -0.2827 21 1 -0.3543 -3.8954 -1.7038 22 1 1.0242 -5.5918 -0.6805 23 1 0.5460 -5.0987 0.9770 24 1 2.1352 -3.7889 2.1421 25 1 3.1937 -4.9237 1.2701 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140194416.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = 25.570285 kcal Electronic energy + Delta-G solvation = -10291.060456 eV Core-core repulsion = 8351.614726 eV Total energy + Delta-G solvation = -1939.445731 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 233.011 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.60585 -32.51943 -31.33057 -29.09012 -28.14985 -24.83233 -23.42215 -20.19012 -19.32137 -16.78884 -15.50770 -14.21430 -13.85801 -13.00211 -12.88812 -12.09229 -11.86219 -11.70090 -11.31407 -10.83351 -10.73361 -10.39569 -10.05783 -10.01660 -9.90225 -9.52790 -9.05790 -8.53789 -7.97447 -6.79574 -5.52415 -2.93441 2.56926 3.48220 3.53777 3.56575 4.59677 5.30184 5.35480 5.51104 5.70753 5.78455 5.86930 5.96231 6.15977 6.28007 6.45941 6.63173 6.70244 6.96376 7.56592 7.84004 8.00290 8.45388 9.36077 9.95694 10.55950 11.52627 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.018855 C = 0.010794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.844300 B = 1484.630101 C = 2593.405544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.221 4.221 8 H 0.105 0.895 9 N -0.590 5.590 10 C 0.148 3.852 11 C -0.146 4.146 12 C -0.124 4.124 13 C 0.156 3.844 14 H 0.044 0.956 15 C -0.077 4.077 16 Br -0.165 7.165 17 H 0.248 0.752 18 H 0.010 0.990 19 H 0.108 0.892 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -8.883 1.743 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.349 4.349 8 H 0.123 0.877 9 N -0.313 5.313 10 C 0.024 3.976 11 C -0.185 4.185 12 C -0.163 4.163 13 C 0.047 3.953 14 H 0.062 0.938 15 C -0.195 4.195 16 Br -0.084 7.084 17 H 0.059 0.941 18 H 0.028 0.972 19 H 0.126 0.874 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.005 -8.178 1.772 9.750 hybrid contribution 0.114 0.547 0.201 0.594 sum 5.119 -7.631 1.973 9.398 Atomic orbital electron populations 1.69806 1.04882 1.24353 1.58901 1.24755 0.95530 0.97559 1.03081 0.86181 0.78840 0.83875 0.77490 1.21831 1.21911 1.20574 1.19966 0.92330 0.81772 1.40842 0.87741 1.44666 1.01734 0.99246 1.85664 1.21981 0.84651 0.92849 0.98157 1.23059 0.96193 0.99166 1.00055 1.22616 0.96364 0.96983 1.00346 1.21072 0.93044 0.87935 0.93239 0.93815 1.25504 0.94428 0.94583 1.05027 1.97172 1.49667 1.62412 1.99159 0.94132 0.97161 0.87441 0.92453 0.92216 0.92093 0.91987 0.89313 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 10.09 55.49 0.56 -26.92 15 2 C -0.02 -0.43 5.49 -17.43 -0.10 -0.53 15 3 Si 0.90 22.90 29.55 -169.99 -5.02 17.87 15 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 15 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 7 C -0.22 -6.04 8.90 -15.06 -0.13 -6.18 15 8 H 0.11 2.78 4.82 -52.49 -0.25 2.52 15 9 N -0.59 -14.69 3.13 -162.58 -0.51 -15.20 15 10 C 0.15 3.58 5.88 -2.53 -0.01 3.56 15 11 C -0.15 -2.73 7.11 -24.43 -0.17 -2.91 15 12 C -0.12 -2.08 6.49 -24.74 -0.16 -2.24 15 13 C 0.16 3.12 3.34 -66.95 -0.22 2.90 15 14 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 15 C -0.08 -1.38 6.14 37.16 0.23 -1.15 15 16 Br -0.16 -3.25 29.83 -68.01 -2.03 -5.28 15 17 H 0.25 7.18 8.31 -40.82 -0.34 6.84 15 18 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 19 H 0.11 2.94 5.87 -51.93 -0.30 2.64 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.06 0.96 7.85 -51.93 -0.41 0.55 15 24 H 0.09 1.63 8.14 -51.93 -0.42 1.21 15 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 221.10 15.07 3.33 3.33 Total: -1.00 -29.51 221.10 -7.30 -36.81 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.06 Total: -4.08 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.57 Total: -6.54 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.05 Total: -42.11 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 35 Polarization: -3.25 SS G_CDS: -2.03 Total: -5.28 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.51 -7.30 -36.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140194416.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.379 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds