Wall clock time and date at job start Mon Mar 30 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48504 * 109.46858 * 85.20738 * 3 2 1 5 5 H 1.48502 * 109.47192 * 325.21510 * 3 2 1 6 6 H 1.48497 * 109.47377 * 205.21210 * 3 2 1 7 7 C 1.38811 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00412 * 171.38451 * 7 2 1 9 9 N 1.36942 * 119.99853 * 351.38835 * 7 2 1 10 10 C 1.47431 * 125.64656 * 339.75581 * 9 7 2 11 11 C 1.54691 * 104.93987 * 204.07534 * 10 9 7 12 12 C 1.55154 * 101.67577 * 323.27886 * 11 10 9 13 13 C 1.47024 * 125.65065 * 160.06967 * 9 7 2 14 14 H 1.08995 * 109.88239 * 59.47848 * 13 9 7 15 15 C 1.53007 * 109.87947 * 298.31819 * 13 9 7 16 16 Br 1.96600 * 109.47019 * 61.45497 * 15 13 9 17 17 H 0.96990 * 120.00013 * 359.97438 * 1 2 3 18 18 H 1.08998 * 110.36586 * 323.00773 * 10 9 7 19 19 H 1.09000 * 110.36292 * 85.33260 * 10 9 7 20 20 H 1.08995 * 111.10145 * 205.10595 * 11 10 9 21 21 H 1.08999 * 110.81472 * 81.32398 * 11 10 9 22 22 H 1.08999 * 110.72298 * 276.96908 * 12 11 10 23 23 H 1.09006 * 110.71374 * 153.70120 * 12 11 10 24 24 H 1.08995 * 109.46707 * 181.45213 * 15 13 9 25 25 H 1.08998 * 109.46946 * 301.45662 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3964 2.1048 1.3952 5 1 1.5019 2.6214 -0.7987 6 1 3.5947 1.4131 -0.5964 7 6 2.0103 -1.2021 -0.0005 8 1 3.0811 -1.2074 -0.1406 9 7 1.3372 -2.3815 0.1765 10 6 0.0007 -2.5254 0.7819 11 6 -0.0432 -3.9785 1.3107 12 6 0.7501 -4.7360 0.2134 13 6 1.8304 -3.7144 -0.1997 14 1 2.7617 -3.9269 0.3252 15 6 2.0558 -3.7782 -1.7117 16 35 3.4164 -2.4562 -2.2278 17 1 -0.4850 0.8400 0.0004 18 1 -0.1222 -1.8187 1.6026 19 1 -0.7743 -2.3741 0.0305 20 1 -1.0687 -4.3425 1.3732 21 1 0.4561 -4.0544 2.2766 22 1 0.1050 -4.9781 -0.6312 23 1 1.2076 -5.6374 0.6213 24 1 2.3965 -4.7764 -1.9864 25 1 1.1213 -3.5582 -2.2279 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140194558.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:31 Heat of formation + Delta-G solvation = 19.455896 kcal Electronic energy + Delta-G solvation = -10296.590409 eV Core-core repulsion = 8356.879538 eV Total energy + Delta-G solvation = -1939.710871 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 233.011 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.61025 -32.48379 -31.25930 -29.12915 -28.10730 -24.76345 -23.43887 -20.22575 -19.32594 -16.72586 -15.34375 -14.36415 -13.85831 -12.99742 -12.84221 -12.07073 -11.98946 -11.64805 -11.23424 -10.76527 -10.72709 -10.33182 -10.05955 -10.01027 -9.82625 -9.68905 -8.93342 -8.60259 -8.09865 -6.65540 -5.63626 -2.99143 2.69351 3.47120 3.53525 3.55840 4.60041 5.32599 5.39358 5.47841 5.69435 5.79309 5.88089 6.01956 6.18355 6.27451 6.44144 6.59859 6.65755 6.98113 7.45678 7.67238 7.98061 8.36522 9.31230 9.91701 10.58458 11.50636 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.019161 C = 0.011148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.529112 B = 1460.932714 C = 2510.992634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.002 4.002 3 Si 0.899 3.101 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.217 4.217 8 H 0.087 0.913 9 N -0.587 5.587 10 C 0.172 3.828 11 C -0.146 4.146 12 C -0.123 4.123 13 C 0.155 3.845 14 H 0.043 0.957 15 C -0.076 4.076 16 Br -0.163 7.163 17 H 0.250 0.750 18 H 0.053 0.947 19 H 0.034 0.966 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -8.708 -2.395 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.199 4.199 3 Si 0.730 3.270 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.346 4.346 8 H 0.105 0.895 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.185 4.185 12 C -0.162 4.162 13 C 0.046 3.954 14 H 0.060 0.940 15 C -0.195 4.195 16 Br -0.082 7.082 17 H 0.060 0.940 18 H 0.072 0.928 19 H 0.052 0.948 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.733 -8.013 -2.597 9.214 hybrid contribution 0.041 0.660 -0.061 0.665 sum 3.774 -7.353 -2.658 8.681 Atomic orbital electron populations 1.69946 1.05011 1.24908 1.56802 1.24857 0.95354 0.97643 1.02029 0.86271 0.79186 0.84190 0.77338 1.21855 1.21927 1.20361 1.19285 0.91507 0.81991 1.41805 0.89498 1.44593 1.17401 1.00419 1.68725 1.21286 0.87665 0.90203 0.96154 1.22938 0.98539 0.99348 0.97683 1.22550 0.97678 0.97077 0.98880 1.21136 0.96137 0.88336 0.89766 0.93958 1.25328 0.96780 0.94598 1.02784 1.97209 1.55886 1.62928 1.92168 0.94040 0.92843 0.94825 0.92276 0.92307 0.91847 0.92089 0.90504 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.12 55.49 0.62 -26.61 15 2 C 0.00 -0.07 5.38 -17.43 -0.09 -0.16 15 3 Si 0.90 22.74 29.56 -169.99 -5.03 17.72 15 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 15 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 15 7 C -0.22 -5.91 8.05 -15.06 -0.12 -6.03 15 8 H 0.09 2.35 6.16 -52.49 -0.32 2.03 15 9 N -0.59 -14.51 3.11 -162.71 -0.51 -15.02 15 10 C 0.17 4.07 5.34 -2.64 -0.01 4.05 15 11 C -0.15 -2.66 7.07 -24.70 -0.17 -2.83 15 12 C -0.12 -2.04 6.48 -24.90 -0.16 -2.21 15 13 C 0.16 3.10 3.34 -66.95 -0.22 2.87 15 14 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 15 C -0.08 -1.41 6.14 37.16 0.23 -1.18 15 16 Br -0.16 -3.31 30.18 -68.01 -2.05 -5.36 15 17 H 0.25 7.24 8.31 -40.82 -0.34 6.90 15 18 H 0.05 1.40 7.61 -51.93 -0.40 1.01 15 19 H 0.03 0.87 7.85 -51.93 -0.41 0.46 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 22 H 0.06 0.99 7.85 -51.93 -0.41 0.58 15 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15 LS Contribution 223.73 15.07 3.37 3.37 Total: -1.00 -29.53 223.73 -7.36 -36.89 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -3.20 Total: -5.51 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.56 Total: -5.48 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.11 Total: -41.63 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.72 kcal Atomic # 35 Polarization: -3.31 SS G_CDS: -2.05 Total: -5.36 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.53 -7.36 -36.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140194558.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.350 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds