Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46732 * 274.34502 * 3 2 1 5 5 H 1.48495 * 109.47420 * 34.33921 * 3 2 1 6 6 H 1.48493 * 109.47169 * 154.34659 * 3 2 1 7 7 C 1.38807 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00148 * 162.61090 * 7 2 1 9 9 N 1.36942 * 119.99815 * 342.60060 * 7 2 1 10 10 C 1.46929 * 120.62731 * 152.28887 * 9 7 2 11 11 C 1.53189 * 108.77616 * 126.41659 * 10 9 7 12 12 C 1.53033 * 109.34312 * 54.61586 * 11 10 9 13 13 C 1.53039 * 109.53653 * 298.68680 * 12 11 10 14 14 H 1.08999 * 109.46930 * 301.35812 * 13 12 11 15 15 Br 1.96603 * 109.52429 * 181.30060 * 13 12 11 16 16 C 1.46926 * 120.63262 * 332.30895 * 9 7 2 17 17 H 0.96997 * 120.00105 * 0.02562 * 1 2 3 18 18 H 1.09003 * 109.58609 * 6.62027 * 10 9 7 19 19 H 1.09005 * 109.69851 * 246.27041 * 10 9 7 20 20 H 1.09001 * 109.49772 * 174.58747 * 11 10 9 21 21 H 1.09004 * 109.49446 * 294.64440 * 11 10 9 22 22 H 1.09002 * 109.45963 * 58.66677 * 12 11 10 23 23 H 1.08995 * 109.46139 * 178.63022 * 12 11 10 24 24 H 1.08994 * 109.58676 * 353.37057 * 16 9 7 25 25 H 1.08995 * 109.58447 * 113.80167 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4058 2.0994 -1.3961 5 1 1.4966 2.6245 0.7897 6 1 3.5906 1.4154 0.6061 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2236 -0.2790 9 7 1.3725 -2.3607 0.3557 10 6 1.8188 -3.6548 -0.1782 11 6 2.0746 -4.6094 0.9922 12 6 0.8201 -4.6886 1.8652 13 6 0.5025 -3.3029 2.4316 14 1 1.3516 -2.9450 3.0138 15 35 -1.0849 -3.4132 3.5864 16 6 0.2287 -2.3334 1.2775 17 1 -0.4850 0.8400 -0.0004 18 1 2.7391 -3.5179 -0.7462 19 1 1.0475 -4.0704 -0.8268 20 1 2.3134 -5.6009 0.6076 21 1 2.9094 -4.2394 1.5876 22 1 -0.0198 -5.0355 1.2632 23 1 0.9917 -5.3860 2.6850 24 1 0.0999 -1.3249 1.6702 25 1 -0.6739 -2.6401 0.7491 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140208073.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -8.977527 kcal Electronic energy + Delta-G solvation = -10198.974250 eV Core-core repulsion = 8258.030413 eV Total energy + Delta-G solvation = -1940.943836 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 233.011 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.17041 -35.08637 -32.88331 -31.77150 -29.60903 -27.25650 -23.92479 -23.32799 -20.77209 -18.77816 -16.94788 -15.89270 -15.51394 -15.12196 -14.73234 -14.58423 -14.10969 -13.19407 -12.97025 -12.60784 -12.50575 -12.17085 -12.07707 -11.70836 -11.48102 -11.22266 -10.69806 -10.66877 -10.57838 -8.76029 -7.92157 -5.37969 0.83776 1.46545 1.48608 1.58221 2.49575 3.23831 3.69542 3.82080 3.97156 4.19120 4.34537 4.50137 4.76384 4.91525 5.06008 5.12459 5.17386 5.23089 5.45880 5.60181 5.63785 6.34173 7.08200 7.78522 8.30435 9.14450 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.035406 B = 0.010885 C = 0.008844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.632800 B = 2571.759912 C = 3165.169919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.269 4.269 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.133 3.867 11 C -0.121 4.121 12 C -0.100 4.100 13 C -0.048 4.048 14 H 0.093 0.907 15 Br -0.185 7.185 16 C 0.190 3.810 17 H 0.252 0.748 18 H 0.059 0.941 19 H 0.017 0.983 20 H 0.095 0.905 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -9.048 6.245 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.244 4.244 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.399 4.399 8 H 0.089 0.911 9 N -0.331 5.331 10 C 0.008 3.992 11 C -0.161 4.161 12 C -0.138 4.138 13 C -0.145 4.145 14 H 0.111 0.889 15 Br -0.106 7.106 16 C 0.063 3.937 17 H 0.061 0.939 18 H 0.078 0.922 19 H 0.035 0.965 20 H 0.114 0.886 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 0.307 -8.949 6.619 11.135 hybrid contribution 0.359 1.170 -0.363 1.277 sum 0.666 -7.778 6.256 10.004 Atomic orbital electron populations 1.70172 1.06736 1.26118 1.54619 1.25840 0.96020 1.01693 1.00831 0.85283 0.78288 0.79512 0.77515 1.21073 1.21907 1.19232 1.19532 0.93246 0.85926 1.41233 0.91086 1.44369 1.36202 1.02845 1.49725 1.21202 0.97654 0.85720 0.94656 1.21976 0.96857 1.00252 0.97010 1.21658 0.99000 0.93205 0.99934 1.25485 0.91505 1.01605 0.95907 0.88907 1.97233 1.45259 1.99043 1.69026 1.20679 0.88519 0.96938 0.87573 0.93917 0.92221 0.96476 0.88617 0.92047 0.91698 0.89550 0.92045 0.97620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 11.19 21.65 0.24 -54.71 15 2 C -0.05 -2.65 4.91 84.86 0.42 -2.23 15 3 Si 0.97 44.37 29.59 68.60 2.03 46.40 15 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 15 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 7 C -0.27 -14.60 9.58 84.03 0.81 -13.79 15 8 H 0.07 3.72 7.89 -2.91 -0.02 3.69 15 9 N -0.61 -30.01 2.99 -699.11 -2.09 -32.10 15 10 C 0.13 5.24 6.52 86.36 0.56 5.81 15 11 C -0.12 -3.68 6.08 30.67 0.19 -3.49 15 12 C -0.10 -3.06 5.23 30.62 0.16 -2.90 15 13 C -0.05 -1.79 3.33 30.67 0.10 -1.69 15 14 H 0.09 3.50 8.14 -2.39 -0.02 3.48 15 15 Br -0.18 -6.33 33.37 -20.37 -0.68 -7.01 15 16 C 0.19 9.08 4.65 86.36 0.40 9.48 15 17 H 0.25 14.41 8.31 -92.71 -0.77 13.64 15 18 H 0.06 2.28 7.93 -2.39 -0.02 2.27 15 19 H 0.02 0.69 8.14 -2.38 -0.02 0.67 15 20 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.06 2.03 8.14 -2.39 -0.02 2.02 15 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.06 3.37 6.04 -2.39 -0.01 3.36 15 25 H 0.01 0.30 8.14 -2.39 -0.02 0.28 15 Total: -1.00 -59.82 225.93 3.29 -56.53 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 1.16 Total: -0.29 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 2.64 Total: -8.82 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.85 Total: -86.81 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 35 Polarization: -6.33 SS G_CDS: -0.68 Total: -7.01 kcal Total: -59.82 3.29 -56.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140208073.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.552 kcal (2) G-P(sol) polarization free energy of solvation -59.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds