Wall clock time and date at job start Mon Mar 30 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 14 14 H 1.09002 * 109.50022 * 58.58128 * 13 12 11 15 15 Br 1.96596 * 109.49848 * 178.68489 * 13 12 11 16 16 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 17 17 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 18 18 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 19 19 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 20 20 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 21 21 H 1.08997 * 109.36488 * 65.49845 * 11 10 9 22 22 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 23 23 H 1.08996 * 109.44694 * 181.25418 * 12 11 10 24 24 H 1.08999 * 109.58741 * 246.15851 * 16 9 7 25 25 H 1.09001 * 109.58687 * 6.44113 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 2.1920 -4.5444 1.1790 14 1 3.0862 -4.1426 1.6556 15 35 2.5477 -6.3726 0.5499 16 6 1.8058 -3.6602 -0.0109 17 1 -0.4851 -0.8358 -0.0842 18 1 0.3030 -1.2180 1.8801 19 1 -0.5696 -2.5799 1.1310 20 1 -0.0185 -3.1676 3.4388 21 1 1.6929 -2.7594 3.1651 22 1 0.1412 -4.9448 1.7039 23 1 1.3041 -5.2140 3.0241 24 1 0.9670 -4.1093 -0.5427 25 1 2.6556 -3.5610 -0.6862 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140208221.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:28 Heat of formation + Delta-G solvation = -11.919254 kcal Electronic energy + Delta-G solvation = -10189.804920 eV Core-core repulsion = 8248.733521 eV Total energy + Delta-G solvation = -1941.071399 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 233.011 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.43691 -35.41104 -32.56445 -32.23430 -29.60121 -27.13159 -24.00489 -23.46733 -20.85521 -19.45536 -16.48514 -16.21278 -15.50803 -15.40793 -15.08653 -14.83600 -13.94847 -13.50851 -13.01917 -12.58539 -12.33326 -11.96182 -11.89632 -11.85828 -11.60303 -11.23011 -10.90933 -10.77194 -10.46822 -9.01984 -8.29389 -5.46889 0.67309 1.59560 1.66235 1.85483 2.64375 3.18471 3.50588 3.64421 3.76394 4.04583 4.23376 4.34344 4.60179 4.69217 4.86604 4.94441 4.98456 5.04481 5.21051 5.40761 5.78957 6.35218 6.97987 7.70780 8.13111 8.96058 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.058476 B = 0.008253 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.713727 B = 3391.871325 C = 3651.638005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.070 4.070 3 Si 1.116 2.884 4 H -0.291 1.291 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.364 4.364 8 H 0.052 0.948 9 N -0.613 5.613 10 C 0.148 3.852 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.041 4.041 14 H 0.099 0.901 15 Br -0.169 7.169 16 C 0.155 3.845 17 H 0.255 0.745 18 H 0.048 0.952 19 H 0.008 0.992 20 H 0.087 0.913 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.024 0.976 25 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 -11.472 4.506 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.267 4.267 3 Si 0.940 3.060 4 H -0.217 1.217 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.493 4.493 8 H 0.070 0.930 9 N -0.338 5.338 10 C 0.023 3.977 11 C -0.165 4.165 12 C -0.136 4.136 13 C -0.138 4.138 14 H 0.117 0.883 15 Br -0.089 7.089 16 C 0.029 3.971 17 H 0.065 0.935 18 H 0.067 0.933 19 H 0.026 0.974 20 H 0.105 0.895 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.042 0.958 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.202 -10.444 4.338 12.064 hybrid contribution -0.053 -1.245 -0.259 1.273 sum 4.150 -11.688 4.079 13.057 Atomic orbital electron populations 1.70901 1.07563 1.29537 1.50066 1.27230 0.96559 1.04770 0.98106 0.82851 0.73857 0.71959 0.77371 1.21704 1.20194 1.20400 1.20238 0.97267 0.89451 1.42347 0.92973 1.44392 1.45924 1.01452 1.42056 1.20864 0.89766 0.98525 0.88535 1.21933 1.01964 0.94719 0.97871 1.21636 0.96651 0.97468 0.97861 1.25171 1.02545 0.86150 0.99915 0.88296 1.97275 1.96555 1.23931 1.91172 1.21108 0.98026 0.85224 0.92775 0.93503 0.93333 0.97387 0.89455 0.92308 0.91405 0.89140 0.95812 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 12.42 21.65 0.27 -56.38 15 2 C -0.07 -3.93 4.69 84.86 0.40 -3.53 15 3 Si 1.12 50.13 29.98 68.60 2.06 52.19 15 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 15 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 15 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.36 -20.20 9.49 84.03 0.80 -19.40 15 8 H 0.05 2.90 7.94 -2.91 -0.02 2.87 15 9 N -0.61 -30.41 2.85 -699.93 -2.00 -32.41 15 10 C 0.15 6.80 4.66 86.22 0.40 7.20 15 11 C -0.13 -4.30 6.06 30.53 0.19 -4.11 15 12 C -0.10 -2.95 5.23 30.62 0.16 -2.79 15 13 C -0.04 -1.34 3.33 30.67 0.10 -1.24 15 14 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 15 Br -0.17 -4.86 33.37 -20.37 -0.68 -5.54 15 16 C 0.16 6.44 5.86 86.36 0.51 6.95 15 17 H 0.26 15.68 6.69 -92.71 -0.62 15.06 15 18 H 0.05 2.53 6.32 -2.39 -0.02 2.52 15 19 H 0.01 0.38 7.86 -2.39 -0.02 0.36 15 20 H 0.09 2.54 8.14 -2.38 -0.02 2.52 15 21 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 25 H 0.06 2.39 7.93 -2.39 -0.02 2.37 15 Total: -1.00 -60.77 224.86 3.51 -57.26 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 1.31 Total: 1.80 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 2.55 Total: -16.91 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -1.73 Total: -88.79 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.06 Total: 52.19 kcal Atomic # 35 Polarization: -4.86 SS G_CDS: -0.68 Total: -5.54 kcal Total: -60.77 3.51 -57.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140208221.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.342 kcal (2) G-P(sol) polarization free energy of solvation -60.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds