Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00450 * 2 1 4 4 H 1.48503 * 109.47300 * 270.00867 * 3 2 1 5 5 H 1.48508 * 109.46839 * 30.00109 * 3 2 1 6 6 H 1.48495 * 109.47334 * 150.00132 * 3 2 1 7 7 C 1.37877 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99926 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00424 * 179.97438 * 7 2 1 10 10 O 1.42106 * 106.40127 * 66.45599 * 9 7 2 11 11 O 1.42100 * 106.40302 * 293.54194 * 9 7 2 12 12 C 1.76199 * 107.22057 * 179.97438 * 9 7 2 13 13 C 1.38588 * 122.63755 * 114.71477 * 12 9 7 14 14 C 1.33226 * 114.97915 * 179.76145 * 13 12 9 15 15 S 1.75858 * 109.74626 * 0.47415 * 14 13 12 16 16 C 1.34095 * 122.64131 * 295.00211 * 12 9 7 17 17 N 1.39616 * 125.23469 * 359.97438 * 16 12 9 18 18 H 0.97003 * 120.00148 * 359.97438 * 1 2 3 19 19 H 1.08000 * 122.50959 * 359.97438 * 13 12 9 20 20 H 1.08001 * 125.12464 * 180.18833 * 14 13 12 21 21 H 0.96994 * 120.00084 * 0.02562 * 17 16 12 22 22 H 0.97002 * 119.99623 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1942 -0.0012 10 8 4.1682 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2510 12 6 4.2880 -2.8772 -0.0010 13 6 4.9749 -3.4470 -1.0613 14 6 5.2992 -4.7288 -0.8978 15 16 4.7147 -5.2953 0.6610 16 6 4.0466 -3.7091 1.0226 17 7 3.3697 -3.3683 2.1952 18 1 -0.4850 0.8401 0.0004 19 1 5.2312 -2.8924 -1.9519 20 1 5.8358 -5.3305 -1.6164 21 1 3.0317 -2.4671 2.3156 22 1 3.2368 -4.0329 2.8891 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140583777.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = -47.290838 kcal Electronic energy + Delta-G solvation = -12591.398511 eV Core-core repulsion = 10172.184454 eV Total energy + Delta-G solvation = -2419.214057 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.997 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.67588 -35.65984 -34.36239 -33.85435 -33.05261 -27.58130 -26.42318 -23.53396 -20.24920 -18.34359 -18.02698 -17.37975 -16.51152 -15.30654 -15.08676 -14.28901 -13.85544 -13.61028 -13.37606 -13.16308 -12.76871 -11.95714 -11.39541 -11.16595 -10.93804 -10.58421 -10.53691 -10.49149 -10.30075 -9.49683 -9.22576 -8.99153 -8.37156 -7.40801 -6.83658 -5.39330 1.42724 1.48924 2.06686 2.28857 2.90257 3.07055 3.17983 3.27442 3.94532 4.02435 4.56621 4.94131 5.29859 5.54284 5.70875 6.12296 6.51682 6.65174 6.70368 7.26990 7.43983 7.75025 8.17826 8.65800 10.27830 Molecular weight = 233.00amu Principal moments of inertia in cm(-1) A = 0.045044 B = 0.010743 C = 0.009999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.468558 B = 2605.823438 C = 2799.518399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.154 3.846 3 Si 0.800 3.200 4 H -0.245 1.245 5 H -0.256 1.256 6 H -0.217 1.217 7 C -1.002 5.002 8 H 0.122 0.878 9 S 2.584 3.416 10 O -0.996 6.996 11 O -0.993 6.993 12 C -0.763 4.763 13 C -0.017 4.017 14 C -0.268 4.268 15 S 0.070 5.930 16 C 0.245 3.755 17 N -0.825 5.825 18 H 0.282 0.718 19 H 0.152 0.848 20 H 0.164 0.836 21 H 0.424 0.576 22 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.206 -7.909 2.529 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.066 4.066 3 Si 0.620 3.380 4 H -0.169 1.169 5 H -0.180 1.180 6 H -0.139 1.139 7 C -1.136 5.136 8 H 0.140 0.860 9 S 2.768 3.232 10 O -0.993 6.993 11 O -0.990 6.990 12 C -0.864 4.864 13 C -0.046 4.046 14 C -0.404 4.404 15 S 0.322 5.678 16 C 0.015 3.985 17 N -0.368 5.368 18 H 0.092 0.908 19 H 0.169 0.831 20 H 0.182 0.818 21 H 0.260 0.740 22 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.668 -8.484 3.264 11.274 hybrid contribution -0.608 1.297 -0.517 1.523 sum 6.060 -7.188 2.747 9.794 Atomic orbital electron populations 1.69980 1.06549 1.29146 1.39258 1.24415 0.94758 0.98797 0.88585 0.87874 0.83699 0.84352 0.82095 1.16895 1.17962 1.13854 1.30112 1.14130 1.02255 1.67091 0.85975 1.01168 0.77368 0.71033 0.73598 1.93422 1.85304 1.75916 1.44646 1.93344 1.85341 1.75879 1.44475 1.29244 1.26503 1.28039 1.02636 1.19436 0.94117 0.93672 0.97368 1.24949 1.15402 0.99604 1.00437 1.83855 1.57394 1.09371 1.17207 1.21715 0.91605 0.96047 0.89124 1.42361 1.60737 1.17518 1.16149 0.90803 0.83057 0.81818 0.73998 0.76557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.12 13.96 55.43 0.77 -22.35 14 2 C 0.15 4.32 5.47 -17.82 -0.10 4.22 14 3 Si 0.80 20.15 26.54 -169.99 -4.51 15.64 14 4 H -0.25 -6.10 7.11 56.52 0.40 -5.70 14 5 H -0.26 -5.89 7.11 56.52 0.40 -5.49 14 6 H -0.22 -5.52 5.61 56.52 0.32 -5.20 14 7 C -1.00 -27.37 9.88 30.60 0.30 -27.07 14 8 H 0.12 3.39 8.06 -52.49 -0.42 2.96 14 9 S 2.58 65.24 3.37 -107.50 -0.36 64.88 14 10 O -1.00 -25.89 14.73 -57.17 -0.84 -26.74 14 11 O -0.99 -26.88 16.05 -57.17 -0.92 -27.80 14 12 C -0.76 -16.20 5.70 -40.91 -0.23 -16.43 14 13 C -0.02 -0.32 9.70 -41.20 -0.40 -0.72 14 14 C -0.27 -4.19 11.21 28.98 0.32 -3.86 14 15 S 0.07 1.04 23.34 -107.50 -2.51 -1.47 14 16 C 0.24 4.52 7.56 -15.46 -0.12 4.41 14 17 N -0.83 -13.59 9.06 31.70 0.29 -13.30 14 18 H 0.28 7.20 8.31 -40.82 -0.34 6.86 14 19 H 0.15 2.71 7.75 -52.49 -0.41 2.30 14 20 H 0.16 1.98 8.06 -52.49 -0.42 1.56 14 21 H 0.42 7.77 6.96 -40.82 -0.28 7.49 14 22 H 0.41 4.88 8.96 -40.82 -0.37 4.51 14 LS Contribution 224.48 15.07 3.38 3.38 Total: -1.00 -31.88 224.48 -6.04 -37.92 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -1.12 Total: 9.29 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: -0.22 Total: -39.46 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 1.06 Total: -35.64 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.76 Total: -54.53 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.51 Total: 15.64 kcal Atomic # 16 Polarization: 66.28 SS G_CDS: -2.87 Total: 63.41 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.88 -6.04 -37.92 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140583777.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.374 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds