Wall clock time and date at job start Mon Mar 30 2020 03:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30527 * 1 3 3 Si 1.86800 * 120.00111 * 2 1 4 4 H 1.48495 * 109.47172 * 274.98877 * 3 2 1 5 5 H 1.48509 * 109.46999 * 34.98477 * 3 2 1 6 6 H 1.48496 * 109.47128 * 154.98044 * 3 2 1 7 7 C 1.40355 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 186.11245 * 7 2 1 9 9 C 1.41721 * 120.00028 * 6.10880 * 7 2 1 10 10 O 1.21815 * 119.99722 * 353.20731 * 9 7 2 11 11 C 1.47627 * 120.00117 * 173.20926 * 9 7 2 12 12 C 1.40067 * 120.06477 * 0.28704 * 11 9 7 13 13 C 1.37579 * 120.16348 * 180.27268 * 12 11 9 14 14 C 1.39035 * 120.10846 * 359.46005 * 13 12 11 15 15 O 1.35410 * 132.82350 * 180.25614 * 14 13 12 16 16 C 1.34244 * 109.24230 * 179.97438 * 15 14 13 17 17 O 1.21592 * 125.23102 * 179.97438 * 16 15 14 18 18 N 1.34766 * 109.53413 * 359.97438 * 16 15 14 19 19 H 0.97003 * 126.26023 * 180.02562 * 18 16 15 20 20 C 1.39474 * 107.47105 * 0.02562 * 18 16 15 21 21 C 1.38120 * 133.26961 * 179.97438 * 20 18 16 22 22 H 0.97000 * 120.00335 * 0.02562 * 1 2 3 23 23 H 1.08009 * 119.92043 * 0.02562 * 12 11 9 24 24 H 1.07999 * 119.94758 * 179.73439 * 13 12 11 25 25 H 1.07998 * 120.14790 * 0.04804 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.3814 2.1073 -1.3947 5 1 1.4933 2.6200 0.8028 6 1 3.5855 1.4120 0.5921 7 6 2.0070 -1.2155 0.0005 8 1 3.0824 -1.2181 0.1001 9 6 1.3045 -2.4394 -0.1295 10 8 0.0864 -2.4467 -0.1173 11 6 2.0488 -3.7055 -0.2797 12 6 3.4494 -3.6993 -0.2879 13 6 4.1451 -4.8773 -0.4334 14 6 3.4602 -6.0804 -0.5617 15 8 3.8711 -7.3621 -0.7105 16 6 2.7977 -8.1645 -0.7890 17 8 2.8333 -9.3722 -0.9258 18 7 1.6748 -7.4256 -0.6929 19 1 0.7644 -7.7593 -0.7200 20 6 2.0613 -6.0934 -0.5474 21 6 1.3573 -4.9134 -0.4069 22 1 -0.4850 0.8400 -0.0004 23 1 3.9847 -2.7669 -0.1837 24 1 5.2250 -4.8680 -0.4435 25 1 0.2775 -4.9241 -0.3953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145107758.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:17 Heat of formation + Delta-G solvation = -85.501262 kcal Electronic energy + Delta-G solvation = -15219.918524 eV Core-core repulsion = 12356.683810 eV Total energy + Delta-G solvation = -2863.234714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.33514 -40.00719 -38.95273 -37.75153 -36.31483 -34.78559 -31.62718 -31.00255 -28.56923 -25.22985 -24.49337 -23.65300 -22.04354 -19.73167 -19.47349 -18.49134 -17.93620 -17.67782 -16.82507 -16.57902 -15.83338 -15.37206 -15.02571 -14.72646 -14.53701 -14.26974 -13.79185 -13.58540 -13.16028 -12.84537 -12.74182 -12.37259 -12.00619 -11.94513 -11.85164 -10.96937 -9.76075 -9.64976 -9.28996 -8.35845 -7.05799 -0.14679 0.11842 1.14073 1.26377 1.42676 1.46034 1.62260 1.80488 2.09162 2.24919 2.70945 3.29294 3.69908 3.76352 3.95670 4.24724 4.33420 4.35403 4.80329 4.94173 5.12435 5.28194 5.40061 5.50335 5.55791 5.98857 6.05461 6.55018 6.71561 6.77556 8.23491 8.48591 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.061829 B = 0.005930 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.751707 B = 4720.489858 C = 5159.456517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.532 4.532 8 H 0.108 0.892 9 C 0.361 3.639 10 O -0.596 6.596 11 C -0.108 4.108 12 C -0.070 4.070 13 C -0.070 4.070 14 C 0.019 3.981 15 O -0.238 6.238 16 C 0.638 3.362 17 O -0.526 6.526 18 N -0.629 5.629 19 H 0.454 0.546 20 C 0.055 3.945 21 C -0.080 4.080 22 H 0.282 0.718 23 H 0.168 0.832 24 H 0.180 0.820 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 -3.940 -0.645 9.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.196 4.196 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.562 4.562 8 H 0.126 0.874 9 C 0.262 3.738 10 O -0.490 6.490 11 C -0.110 4.110 12 C -0.088 4.088 13 C -0.088 4.088 14 C -0.028 4.028 15 O -0.143 6.143 16 C 0.393 3.607 17 O -0.413 6.413 18 N -0.287 5.287 19 H 0.299 0.701 20 C -0.043 4.043 21 C -0.101 4.101 22 H 0.093 0.907 23 H 0.185 0.815 24 H 0.197 0.803 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.819 -4.682 -0.725 9.142 hybrid contribution -0.846 0.241 -0.047 0.880 sum 6.973 -4.440 -0.772 8.303 Atomic orbital electron populations 1.70096 1.10105 1.30029 1.31103 1.27279 0.95407 1.05694 0.91251 0.85039 0.79528 0.74766 0.79392 1.18709 1.20003 1.16081 1.21510 0.97108 0.91806 1.45757 0.87392 1.18726 0.88213 0.87763 0.79133 1.90485 1.17194 1.88837 1.52511 1.21474 0.95736 0.95322 0.98514 1.21545 0.92158 0.98609 0.96509 1.20326 1.02087 0.85736 1.00649 1.19513 0.90946 0.84050 1.08254 1.84873 1.33386 1.16683 1.79380 1.18444 0.78941 0.85134 0.78210 1.91137 1.84226 1.08460 1.57436 1.43436 1.10715 1.05141 1.69431 0.70080 1.18293 0.93510 0.85592 1.06945 1.20150 1.00340 0.88454 1.01148 0.90712 0.81468 0.80285 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.38 11.76 21.89 0.26 -43.12 15 2 C 0.02 1.15 5.49 85.40 0.47 1.62 15 3 Si 0.99 35.39 29.57 68.60 2.03 37.42 15 4 H -0.26 -9.03 7.11 99.48 0.71 -8.33 15 5 H -0.28 -9.66 7.11 99.48 0.71 -8.95 15 6 H -0.24 -7.61 7.11 99.48 0.71 -6.90 15 7 C -0.53 -26.23 8.83 23.65 0.21 -26.03 15 8 H 0.11 4.46 6.05 -2.91 -0.02 4.45 15 9 C 0.36 18.97 6.90 25.61 0.18 19.15 15 10 O -0.60 -36.73 14.92 -4.72 -0.07 -36.80 15 11 C -0.11 -4.43 5.89 -19.99 -0.12 -4.55 15 12 C -0.07 -2.17 9.42 22.56 0.21 -1.96 15 13 C -0.07 -1.80 10.05 22.31 0.22 -1.57 15 14 C 0.02 0.55 7.37 22.87 0.17 0.72 15 15 O -0.24 -7.26 10.71 10.01 0.11 -7.15 15 16 C 0.64 19.86 9.43 129.79 1.22 21.09 15 17 O -0.53 -18.66 18.05 19.22 0.35 -18.31 15 18 N -0.63 -17.20 6.22 -430.05 -2.68 -19.88 15 19 H 0.45 9.66 8.96 -92.71 -0.83 8.83 15 20 C 0.05 1.73 7.24 38.30 0.28 2.01 15 21 C -0.08 -2.99 9.61 22.61 0.22 -2.77 15 22 H 0.28 13.99 8.29 -92.71 -0.77 13.22 15 23 H 0.17 4.61 6.20 -2.91 -0.02 4.59 15 24 H 0.18 3.12 8.06 -2.91 -0.02 3.10 15 25 H 0.13 4.95 7.65 -2.91 -0.02 4.93 15 Total: -1.00 -68.69 237.99 3.49 -65.20 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.44 Total: 14.93 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 3.06 Total: 7.71 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -2.42 Total: -63.00 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: 0.38 Total: -62.27 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -68.69 3.49 -65.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145107758.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.300 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds