Wall clock time and date at job start Mon Mar 30 2020 03:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39847 * 120.00005 * 2 1 4 4 C 1.39605 * 119.84045 * 180.27176 * 3 2 1 5 5 C 1.38060 * 120.54865 * 180.28234 * 4 3 2 6 6 C 1.38740 * 120.21967 * 359.45346 * 5 4 3 7 7 N 1.38865 * 120.16384 * 180.29254 * 6 5 4 8 8 C 1.41562 * 119.67142 * 0.27486 * 6 5 4 9 9 C 1.41030 * 120.26253 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00302 * 333.80637 * 9 8 6 11 11 C 1.39889 * 119.99562 * 153.80137 * 9 8 6 12 12 N 1.30894 * 120.00417 * 343.90469 * 11 9 8 13 13 Si 1.86799 * 119.99688 * 163.90973 * 11 9 8 14 14 H 1.48498 * 109.47431 * 59.99701 * 13 11 9 15 15 H 1.48504 * 109.47082 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.47086 * 299.99677 * 13 11 9 17 17 C 1.38001 * 119.84118 * 0.02562 * 3 2 1 18 18 C 1.46500 * 120.00039 * 180.02562 * 2 1 3 19 19 C 1.53001 * 117.49809 * 8.62122 * 18 2 1 20 20 C 1.52999 * 117.49706 * 299.99703 * 18 2 1 21 21 H 1.08994 * 109.47406 * 89.99132 * 1 2 3 22 22 H 1.09001 * 109.46927 * 209.99879 * 1 2 3 23 23 H 1.09006 * 109.46907 * 329.98849 * 1 2 3 24 24 H 1.07998 * 119.72651 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.89002 * 179.72397 * 5 4 3 26 26 H 0.97004 * 119.99822 * 354.05702 * 7 6 5 27 27 H 0.96991 * 120.00376 * 174.04796 * 7 6 5 28 28 H 0.96998 * 120.00672 * 175.65430 * 12 11 9 29 29 H 1.08009 * 120.11520 * 359.96906 * 17 3 2 30 30 H 1.09004 * 115.54812 * 154.32392 * 18 2 1 31 31 H 1.08996 * 117.49766 * 359.97438 * 19 18 2 32 32 H 1.09004 * 117.50064 * 145.02208 * 19 18 2 33 33 H 1.08997 * 117.49488 * 214.97665 * 20 18 2 34 34 H 1.08998 * 117.50287 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1642 1.2111 0.0000 4 6 3.5603 1.2072 -0.0057 5 6 4.2653 2.3942 0.0000 6 6 3.5912 3.6068 0.0002 7 7 4.3016 4.8001 -0.0001 8 6 2.1757 3.6217 0.0003 9 6 1.4778 4.8472 0.0000 10 1 1.9398 5.7319 0.4124 11 6 0.1870 4.9167 -0.5348 12 7 -0.2542 3.9564 -1.3071 13 14 -0.9070 6.3804 -0.1469 14 1 -0.2539 7.6264 -0.6225 15 1 -2.2155 6.2150 -0.8295 16 1 -1.1216 6.4629 1.3203 17 6 1.4709 2.4043 0.0005 18 6 2.1975 -1.2687 -0.0006 19 6 1.3887 -2.5513 -0.2046 20 6 1.9631 -2.2203 1.1744 21 1 -0.3634 0.0002 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 4.0932 0.2679 -0.0106 25 1 5.3452 2.3788 0.0000 26 1 5.2677 4.7894 0.0865 27 1 3.8318 5.6441 -0.0871 28 1 -1.1699 3.9729 -1.6267 29 1 0.3908 2.4035 0.0004 30 1 3.2002 -1.2325 -0.4267 31 1 0.3116 -2.4512 -0.3379 32 1 1.8591 -3.3593 -0.7650 33 1 2.8115 -2.8104 1.5210 34 1 1.2643 -1.9022 1.9480 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166377314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:27 Heat of formation + Delta-G solvation = 44.176456 kcal Electronic energy + Delta-G solvation = -16068.644088 eV Core-core repulsion = 13580.417473 eV Total energy + Delta-G solvation = -2488.226615 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11784 -38.57885 -35.58146 -35.33330 -33.07001 -31.34310 -28.73195 -27.82236 -25.90150 -23.21637 -22.95545 -22.27340 -20.60564 -19.10206 -17.78938 -17.44747 -16.94391 -16.43861 -16.03319 -15.54659 -14.96105 -14.42247 -14.39160 -14.08639 -13.61369 -13.29125 -13.06212 -12.89316 -12.81412 -12.58985 -12.22939 -12.13532 -11.96305 -11.81326 -11.24191 -11.06908 -10.94589 -10.88956 -9.20648 -9.07196 -8.48976 -7.24162 -5.99867 1.12735 1.41329 1.49731 1.52217 1.63350 2.28141 2.51739 2.89126 3.09652 3.77415 3.93810 3.97666 4.08952 4.20647 4.31435 4.61350 4.69350 4.80376 4.82020 4.91390 4.97736 5.12360 5.24947 5.28243 5.37259 5.46649 5.58478 5.91106 6.07257 6.11900 6.30284 6.57743 6.86490 7.04248 7.08437 7.16348 7.46612 7.67512 8.51872 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.008504 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.948338 B = 3291.799373 C = 4224.338552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.620 5.620 3 C 0.167 3.833 4 C -0.254 4.254 5 C -0.157 4.157 6 C 0.069 3.931 7 N -0.879 5.879 8 C 0.058 3.942 9 C -0.492 4.492 10 H 0.073 0.927 11 C 0.035 3.965 12 N -0.833 5.833 13 Si 0.971 3.029 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.266 1.266 17 C -0.224 4.224 18 C 0.077 3.923 19 C -0.177 4.177 20 C -0.197 4.197 21 H 0.031 0.969 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.390 0.610 27 H 0.390 0.610 28 H 0.279 0.721 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -6.999 2.237 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.333 5.333 3 C 0.069 3.931 4 C -0.277 4.277 5 C -0.181 4.181 6 C -0.033 4.033 7 N -0.423 5.423 8 C 0.052 3.948 9 C -0.523 4.523 10 H 0.091 0.909 11 C -0.178 4.178 12 N -0.460 5.460 13 Si 0.794 3.206 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.191 1.191 17 C -0.249 4.249 18 C -0.028 4.028 19 C -0.215 4.215 20 C -0.236 4.236 21 H 0.049 0.951 22 H 0.097 0.903 23 H 0.064 0.936 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.218 0.782 27 H 0.218 0.782 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.209 -7.195 2.031 7.573 hybrid contribution -0.487 1.011 0.009 1.123 sum 0.722 -6.184 2.040 6.552 Atomic orbital electron populations 1.21334 0.80557 1.01446 0.99968 1.45665 1.03797 1.01754 1.82128 1.17666 0.91300 0.85171 0.98957 1.19999 0.91408 0.97041 1.19255 1.20075 0.97871 0.91009 1.09151 1.18057 0.91241 0.87081 1.06898 1.41672 1.07842 1.05032 1.87719 1.17410 0.89941 0.93798 0.93602 1.19353 1.00588 0.95852 1.36538 0.90858 1.26534 0.99438 0.99892 0.91912 1.69953 1.17057 1.34379 1.24659 0.85425 0.77345 0.78746 0.79130 1.18523 1.19938 1.19110 1.20665 0.99007 0.90344 1.14855 1.21528 0.97134 0.80875 1.03309 1.23410 1.00359 0.98016 0.99746 1.23436 1.04130 1.03995 0.92036 0.95054 0.90327 0.93631 0.87147 0.86916 0.78181 0.78231 0.91038 0.87427 0.86448 0.88603 0.86300 0.86897 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.09 9.42 127.77 1.20 5.30 16 2 N -0.62 -25.10 3.35 -698.09 -2.34 -27.43 16 3 C 0.17 8.11 6.55 38.14 0.25 8.36 16 4 C -0.25 -11.55 9.28 22.56 0.21 -11.34 16 5 C -0.16 -7.13 9.87 22.35 0.22 -6.91 16 6 C 0.07 3.40 6.79 38.97 0.26 3.67 16 7 N -0.88 -35.86 8.97 -50.31 -0.45 -36.31 16 8 C 0.06 3.18 5.57 -21.18 -0.12 3.06 16 9 C -0.49 -26.63 8.44 23.35 0.20 -26.43 16 10 H 0.07 3.76 6.79 -2.91 -0.02 3.74 16 11 C 0.03 1.80 5.16 85.23 0.44 2.24 16 12 N -0.83 -44.94 10.96 21.82 0.24 -44.71 16 13 Si 0.97 39.48 29.59 68.60 2.03 41.51 16 14 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 15 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 C -0.22 -12.20 7.82 22.81 0.18 -12.02 16 18 C 0.08 2.46 5.97 44.99 0.27 2.73 16 19 C -0.18 -4.27 9.72 30.60 0.30 -3.98 16 20 C -0.20 -5.03 10.13 30.60 0.31 -4.72 16 21 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.08 2.34 6.33 -2.39 -0.02 2.32 16 23 H 0.04 1.88 6.18 -2.38 -0.01 1.87 16 24 H 0.11 4.40 6.09 -2.91 -0.02 4.39 16 25 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 26 H 0.39 13.09 8.84 -92.71 -0.82 12.27 16 27 H 0.39 15.78 7.11 -92.71 -0.66 15.13 16 28 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 29 H 0.11 6.08 4.26 -2.91 -0.01 6.06 16 30 H 0.12 3.71 6.39 -2.38 -0.02 3.69 16 31 H 0.10 2.30 6.46 -2.39 -0.02 2.28 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 2.27 8.12 -2.39 -0.02 2.25 16 Total: -1.00 -62.08 276.27 2.86 -59.22 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -0.34 Total: 47.77 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.72 Total: -40.04 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -2.55 Total: -108.45 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -62.08 2.86 -59.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166377314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.395 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds