Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.50699 * 109.47204 * 120.00360 * 2 1 3 5 5 H 1.07998 * 120.00134 * 120.00509 * 4 2 1 6 6 C 1.37872 * 119.99848 * 299.99878 * 4 2 1 7 7 N 1.31520 * 120.00229 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00073 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46717 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47120 * 120.00060 * 8 6 4 11 11 H 1.48500 * 109.47175 * 240.00168 * 8 6 4 12 12 N 1.46897 * 109.47228 * 240.00596 * 2 1 3 13 13 C 1.47923 * 110.99716 * 290.78262 * 12 2 1 14 14 C 1.54273 * 102.76837 * 148.66352 * 13 12 2 15 15 C 1.51589 * 102.99142 * 334.96010 * 14 13 12 16 16 C 1.38130 * 131.48550 * 195.48969 * 15 14 13 17 17 C 1.38244 * 120.21322 * 179.35173 * 16 15 14 18 18 C 1.38303 * 119.93939 * 0.02562 * 17 16 15 19 19 C 1.38458 * 120.17151 * 0.15749 * 18 17 16 20 20 N 1.40013 * 119.95724 * 179.97438 * 19 18 17 21 21 C 1.38695 * 108.00301 * 15.42759 * 15 14 13 22 22 H 1.09000 * 109.46908 * 58.15715 * 1 2 3 23 23 H 1.08998 * 109.46762 * 178.16058 * 1 2 3 24 24 H 1.09001 * 109.47144 * 298.15972 * 1 2 3 25 25 H 0.97001 * 120.00117 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.78304 * 267.36720 * 13 12 2 27 27 H 1.08995 * 110.78936 * 30.81223 * 13 12 2 28 28 H 1.08994 * 111.22628 * 216.32447 * 14 13 12 29 29 H 1.08997 * 110.14476 * 93.08941 * 14 13 12 30 30 H 1.08001 * 119.89528 * 359.37392 * 16 15 14 31 31 H 1.08005 * 120.02778 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.91510 * 180.13661 * 18 17 16 33 33 H 0.97003 * 120.00547 * 25.18597 * 20 19 18 34 34 H 0.97006 * 119.99679 * 204.91031 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1465 -2.2872 3.6036 10 1 3.1466 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 1.7344 -2.1421 -1.1283 14 6 1.5329 -2.5230 -2.6096 15 6 1.1026 -1.2146 -3.2425 16 6 0.5102 -0.9379 -4.4593 17 6 0.2000 0.3651 -4.8017 18 6 0.4838 1.3956 -3.9241 19 6 1.0810 1.1263 -2.7043 20 7 1.3668 2.1732 -1.8195 21 6 1.4037 -0.1905 -2.3569 22 1 -0.3633 0.5422 -0.8730 23 1 -0.3633 -1.0271 -0.0330 24 1 -0.3633 0.4850 0.9060 25 1 0.7082 1.1607 3.4844 26 1 2.5773 -2.6814 -0.6961 27 1 0.8225 -2.3295 -0.5616 28 1 0.7557 -3.2791 -2.7204 29 1 2.4730 -2.8687 -3.0395 30 1 0.2883 -1.7420 -5.1452 31 1 -0.2627 0.5780 -5.7541 32 1 0.2393 2.4132 -4.1911 33 1 0.8544 2.9958 -1.8597 34 1 2.0747 2.0742 -1.1637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168381316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = 46.377865 kcal Electronic energy + Delta-G solvation = -16706.309800 eV Core-core repulsion = 14218.178646 eV Total energy + Delta-G solvation = -2488.131154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19739 -36.40474 -34.64098 -32.98743 -30.76036 -28.55087 -28.31752 -26.65213 -25.17625 -22.23553 -21.55121 -20.74238 -19.43069 -16.54362 -15.82394 -15.67409 -15.46066 -15.18494 -14.39727 -14.13070 -13.65764 -13.01002 -12.75444 -12.44216 -12.31793 -11.67110 -11.29286 -11.15665 -10.97652 -10.91503 -10.69508 -10.59576 -10.51290 -10.18239 -9.99795 -9.57551 -8.99273 -8.80022 -8.42297 -7.40988 -6.37384 -6.10418 -4.15985 2.00646 2.17682 3.24069 3.32455 3.36419 4.30580 4.38771 4.60277 4.82103 5.21882 5.26091 5.42064 5.58916 5.81411 5.81907 5.95149 6.01923 6.37543 6.44218 6.56127 6.62177 6.70395 6.80515 6.89665 7.00017 7.05498 7.16569 7.31461 7.57863 7.65270 7.77407 7.86879 8.23502 8.27348 8.48097 8.54751 8.88862 9.49606 10.95655 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.038029 B = 0.008549 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.095174 B = 3274.439620 C = 3788.813255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.205 3.795 3 H 0.050 0.950 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.471 5.471 13 C 0.063 3.937 14 C -0.086 4.086 15 C -0.123 4.123 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.177 4.177 19 C 0.196 3.804 20 N -0.883 5.883 21 C 0.065 3.935 22 H 0.020 0.980 23 H 0.023 0.977 24 H 0.088 0.912 25 H 0.261 0.739 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.387 0.613 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -1.212 -9.652 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.100 3.900 3 H 0.068 0.932 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.185 5.185 13 C -0.064 4.064 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.201 4.201 19 C 0.092 3.908 20 N -0.428 5.428 21 C -0.038 4.038 22 H 0.039 0.961 23 H 0.043 0.957 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.215 0.785 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.614 -1.081 -9.431 9.513 hybrid contribution -0.435 -0.163 1.213 1.298 sum -1.048 -1.245 -8.218 8.378 Atomic orbital electron populations 1.22358 0.99644 0.98911 1.01459 1.19572 0.90618 0.94873 0.84958 0.93228 1.21214 1.31227 1.12886 0.89865 0.91818 1.24914 0.94995 0.95070 0.99036 1.69897 1.36544 1.22889 1.23441 0.86452 0.78575 0.79691 0.82783 1.19707 1.20993 1.21071 1.61025 1.51140 1.03895 1.02421 1.22904 1.01330 0.87953 0.94169 1.21302 1.00611 0.94664 0.95823 1.20334 1.01825 0.94951 0.95663 1.20041 1.03313 0.96224 0.95990 1.20515 1.02445 0.92280 0.98978 1.20352 1.07855 0.98887 0.93008 1.17202 0.97527 0.86154 0.89966 1.42768 1.42807 1.16461 1.40809 1.19533 0.97613 0.91959 0.94673 0.96102 0.95748 0.89374 0.92951 0.89945 0.91876 0.91191 0.90696 0.87419 0.86941 0.86823 0.78537 0.76340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 8.24 37.16 0.31 -3.71 16 2 C 0.20 5.00 1.93 -68.86 -0.13 4.87 16 3 H 0.05 1.28 5.20 -51.93 -0.27 1.01 16 4 C -0.51 -13.64 7.91 -34.44 -0.27 -13.91 16 5 H 0.06 1.69 6.70 -52.49 -0.35 1.34 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.49 11.31 55.43 0.63 -23.86 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.47 -10.42 5.16 -162.79 -0.84 -11.26 16 13 C 0.06 1.25 5.41 -2.59 -0.01 1.24 16 14 C -0.09 -1.46 7.02 -26.78 -0.19 -1.65 16 15 C -0.12 -2.28 6.23 -104.06 -0.65 -2.93 16 16 C -0.14 -2.20 10.03 -39.62 -0.40 -2.60 16 17 C -0.12 -1.89 10.05 -39.56 -0.40 -2.29 16 18 C -0.18 -2.92 9.91 -39.48 -0.39 -3.31 16 19 C 0.20 3.71 5.41 -83.39 -0.45 3.26 16 20 N -0.88 -15.64 7.78 32.60 0.25 -15.38 16 21 C 0.07 1.33 4.77 -83.12 -0.40 0.94 16 22 H 0.02 0.47 5.78 -51.93 -0.30 0.17 16 23 H 0.02 0.58 6.42 -51.93 -0.33 0.25 16 24 H 0.09 2.35 6.02 -51.93 -0.31 2.04 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.08 1.59 7.62 -51.93 -0.40 1.20 16 27 H 0.06 1.34 6.02 -51.93 -0.31 1.03 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.39 5.85 8.91 -40.82 -0.36 5.48 16 34 H 0.40 7.78 6.29 -40.82 -0.26 7.52 16 LS Contribution 265.06 15.07 3.99 3.99 Total: -1.00 -28.13 265.06 -8.21 -36.34 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.15 Total: 12.88 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.08 Total: -18.54 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.04 Total: -50.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.13 -8.21 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168381316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.716 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds