Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.50699 * 109.47204 * 120.00360 * 2 1 3 5 5 H 1.07998 * 120.00134 * 120.00509 * 4 2 1 6 6 C 1.37872 * 119.99848 * 299.99878 * 4 2 1 7 7 N 1.31520 * 120.00229 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00073 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46717 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47120 * 120.00060 * 8 6 4 11 11 H 1.48500 * 109.47175 * 240.00168 * 8 6 4 12 12 N 1.46897 * 109.47228 * 240.00596 * 2 1 3 13 13 C 1.47923 * 110.99716 * 290.78262 * 12 2 1 14 14 C 1.54273 * 102.76837 * 148.66352 * 13 12 2 15 15 C 1.51589 * 102.99142 * 334.96010 * 14 13 12 16 16 C 1.38130 * 131.48550 * 195.48969 * 15 14 13 17 17 C 1.38244 * 120.21322 * 179.35173 * 16 15 14 18 18 C 1.38303 * 119.93939 * 0.02562 * 17 16 15 19 19 C 1.38458 * 120.17151 * 0.15749 * 18 17 16 20 20 N 1.40013 * 119.95724 * 179.97438 * 19 18 17 21 21 C 1.38695 * 108.00301 * 15.42759 * 15 14 13 22 22 H 1.09000 * 109.46908 * 58.15715 * 1 2 3 23 23 H 1.08998 * 109.46762 * 178.16058 * 1 2 3 24 24 H 1.09001 * 109.47144 * 298.15972 * 1 2 3 25 25 H 0.97001 * 120.00117 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.78304 * 267.36720 * 13 12 2 27 27 H 1.08995 * 110.78936 * 30.81223 * 13 12 2 28 28 H 1.08994 * 111.22628 * 216.32447 * 14 13 12 29 29 H 1.08997 * 110.14476 * 93.08941 * 14 13 12 30 30 H 1.08001 * 119.89528 * 359.37392 * 16 15 14 31 31 H 1.08005 * 120.02778 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.91510 * 180.13661 * 18 17 16 33 33 H 0.97003 * 120.00547 * 25.18597 * 20 19 18 34 34 H 0.97006 * 119.99679 * 204.91031 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1465 -2.2872 3.6036 10 1 3.1466 -0.1876 4.8164 11 1 1.1661 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 1.7344 -2.1421 -1.1283 14 6 1.5329 -2.5230 -2.6096 15 6 1.1026 -1.2146 -3.2425 16 6 0.5102 -0.9379 -4.4593 17 6 0.2000 0.3651 -4.8017 18 6 0.4838 1.3956 -3.9241 19 6 1.0810 1.1263 -2.7043 20 7 1.3668 2.1732 -1.8195 21 6 1.4037 -0.1905 -2.3569 22 1 -0.3633 0.5422 -0.8730 23 1 -0.3633 -1.0271 -0.0330 24 1 -0.3633 0.4850 0.9060 25 1 0.7082 1.1607 3.4844 26 1 2.5773 -2.6814 -0.6961 27 1 0.8225 -2.3295 -0.5616 28 1 0.7557 -3.2791 -2.7204 29 1 2.4730 -2.8687 -3.0395 30 1 0.2883 -1.7420 -5.1452 31 1 -0.2627 0.5780 -5.7541 32 1 0.2393 2.4132 -4.1911 33 1 0.8544 2.9958 -1.8597 34 1 2.0747 2.0742 -1.1637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168381316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = 28.445620 kcal Electronic energy + Delta-G solvation = -16707.087400 eV Core-core repulsion = 14218.178646 eV Total energy + Delta-G solvation = -2488.908755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65993 -37.88978 -36.15883 -34.75232 -32.43237 -30.08529 -29.76084 -28.18851 -27.19709 -23.74328 -23.14095 -22.11459 -21.03855 -18.32811 -17.38022 -17.18664 -17.03930 -16.66319 -16.16993 -15.56929 -15.07004 -14.71322 -14.37686 -13.99602 -13.78409 -13.32247 -12.98707 -12.89662 -12.64136 -12.55654 -12.30507 -12.29119 -12.04091 -11.86862 -11.80591 -10.97823 -10.87397 -10.56591 -10.30317 -8.79580 -8.14839 -7.85124 -6.26030 0.66199 0.84422 1.38999 1.41646 1.52524 2.40028 2.99035 3.12853 3.25738 3.37756 3.88002 4.01924 4.29238 4.46442 4.54034 4.59353 4.75141 4.75969 4.93202 5.00896 5.05283 5.10203 5.14810 5.24200 5.43734 5.54007 5.64785 5.70572 5.81551 5.86634 6.05065 6.20611 6.39120 6.66954 6.85772 6.93137 7.13760 7.42894 8.90856 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.038029 B = 0.008549 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.095174 B = 3274.439620 C = 3788.813255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.484 5.484 13 C 0.059 3.941 14 C -0.076 4.076 15 C -0.131 4.131 16 C -0.139 4.139 17 C -0.111 4.111 18 C -0.180 4.180 19 C 0.177 3.823 20 N -0.884 5.884 21 C 0.020 3.980 22 H 0.027 0.973 23 H 0.016 0.984 24 H 0.061 0.939 25 H 0.261 0.739 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.397 0.603 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -1.856 -11.473 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.106 3.894 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.198 5.198 13 C -0.068 4.068 14 C -0.113 4.113 15 C -0.135 4.135 16 C -0.159 4.159 17 C -0.130 4.130 18 C -0.204 4.204 19 C 0.072 3.928 20 N -0.429 5.429 21 C -0.082 4.082 22 H 0.046 0.954 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.226 0.774 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.983 -1.721 -11.290 11.463 hybrid contribution -0.364 0.068 1.651 1.692 sum -1.347 -1.653 -9.639 9.872 Atomic orbital electron populations 1.22104 0.99957 0.97974 1.00244 1.19298 0.90140 0.94123 0.85802 0.94982 1.21488 1.31178 1.12849 0.91132 0.92432 1.25640 0.95226 0.95766 1.01676 1.70013 1.37359 1.23940 1.23957 0.85505 0.78042 0.78693 0.79377 1.19268 1.20666 1.20771 1.61014 1.52180 1.04569 1.02056 1.22906 1.00163 0.87283 0.96403 1.21277 1.02192 0.94733 0.93144 1.20686 1.01624 0.94892 0.96293 1.20441 1.02273 0.97678 0.95511 1.21022 1.00537 0.91561 0.99884 1.20727 1.06832 1.00662 0.92134 1.17576 0.98252 0.85902 0.91084 1.42713 1.42696 1.16895 1.40566 1.19785 1.00351 0.93348 0.94706 0.95406 0.96525 0.92007 0.92952 0.90171 0.94003 0.88867 0.89053 0.84345 0.83144 0.84451 0.77371 0.77549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.21 8.24 71.98 0.59 -6.61 16 2 C 0.21 10.69 1.93 44.17 0.09 10.78 16 3 H 0.03 1.74 5.20 -2.39 -0.01 1.73 16 4 C -0.53 -28.74 7.91 25.60 0.20 -28.54 16 5 H 0.06 3.12 6.70 -2.91 -0.02 3.10 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.91 -51.42 11.31 21.45 0.24 -51.18 16 8 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 N -0.48 -21.73 5.16 -668.94 -3.45 -25.18 16 13 C 0.06 2.36 5.41 86.54 0.47 2.83 16 14 C -0.08 -2.43 7.02 30.56 0.21 -2.22 16 15 C -0.13 -4.59 6.23 -19.50 -0.12 -4.71 16 16 C -0.14 -4.01 10.03 22.25 0.22 -3.78 16 17 C -0.11 -2.96 10.05 22.29 0.22 -2.74 16 18 C -0.18 -5.46 9.91 22.34 0.22 -5.24 16 19 C 0.18 6.54 5.41 38.31 0.21 6.75 16 20 N -0.88 -31.57 7.78 -50.78 -0.40 -31.97 16 21 C 0.02 0.81 4.77 38.30 0.18 0.99 16 22 H 0.03 1.30 5.78 -2.39 -0.01 1.29 16 23 H 0.02 0.80 6.42 -2.39 -0.02 0.79 16 24 H 0.06 3.40 6.02 -2.39 -0.01 3.39 16 25 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.08 3.15 7.62 -2.39 -0.02 3.13 16 27 H 0.04 1.82 6.02 -2.39 -0.01 1.80 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.40 11.99 8.91 -92.71 -0.83 11.17 16 34 H 0.39 15.72 6.29 -92.70 -0.58 15.14 16 Total: -1.00 -60.77 265.06 1.09 -59.67 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.28 Total: 34.53 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 2.95 Total: -31.17 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.60 Total: -108.33 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -60.77 1.09 -59.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168381316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.120 kcal (2) G-P(sol) polarization free energy of solvation -60.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds