Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47414 * 2 1 4 4 C 1.50702 * 109.47056 * 239.99658 * 2 1 3 5 5 H 1.08001 * 120.00368 * 245.14691 * 4 2 1 6 6 C 1.37877 * 119.99907 * 65.15183 * 4 2 1 7 7 N 1.31514 * 120.00054 * 201.01907 * 6 4 2 8 8 Si 1.86805 * 120.00126 * 21.01710 * 6 4 2 9 9 H 1.48499 * 109.47158 * 92.90487 * 8 6 4 10 10 H 1.48496 * 109.47251 * 212.91338 * 8 6 4 11 11 H 1.48509 * 109.46878 * 332.91184 * 8 6 4 12 12 N 1.46909 * 109.47218 * 119.99905 * 2 1 3 13 13 C 1.47925 * 110.99929 * 44.79797 * 12 2 1 14 14 C 1.54586 * 102.59995 * 149.07720 * 13 12 2 15 15 C 1.51580 * 102.89782 * 334.51348 * 14 13 12 16 16 C 1.38139 * 131.47475 * 196.11456 * 15 14 13 17 17 C 1.38238 * 120.21118 * 179.40817 * 16 15 14 18 18 C 1.38306 * 119.93943 * 359.96348 * 17 16 15 19 19 C 1.38454 * 120.17517 * 0.11249 * 18 17 16 20 20 N 1.40014 * 119.96630 * 180.02562 * 19 18 17 21 21 C 1.38690 * 108.00790 * 15.78741 * 15 14 13 22 22 H 1.09002 * 109.47144 * 291.12844 * 1 2 3 23 23 H 1.08998 * 109.47257 * 51.12783 * 1 2 3 24 24 H 1.09000 * 109.47496 * 171.13339 * 1 2 3 25 25 H 0.97004 * 120.00006 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.77931 * 267.35322 * 13 12 2 27 27 H 1.09001 * 110.78182 * 30.60798 * 13 12 2 28 28 H 1.08995 * 110.72857 * 216.15665 * 14 13 12 29 29 H 1.09000 * 110.72577 * 92.86655 * 14 13 12 30 30 H 1.07993 * 119.89635 * 359.37911 * 16 15 14 31 31 H 1.08008 * 120.03373 * 179.97438 * 17 16 15 32 32 H 1.08006 * 119.91776 * 180.13043 * 18 17 16 33 33 H 0.97003 * 119.99301 * 22.82083 * 20 19 18 34 34 H 0.96997 * 120.00190 * 202.81947 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5829 -1.6345 -1.1335 6 6 1.7890 -0.1808 -2.4799 7 7 1.8409 -0.9532 -3.5431 8 14 1.3855 1.6340 -2.6628 9 1 2.6337 2.3947 -2.9242 10 1 0.4453 1.8202 -3.7970 11 1 0.7566 2.1296 -1.4120 12 7 2.0197 -0.6925 1.1995 13 6 1.2725 -1.9484 1.4287 14 6 2.3302 -2.8518 2.1031 15 6 3.6383 -2.2760 1.5983 16 6 4.9208 -2.7893 1.5892 17 6 5.9601 -2.0548 1.0494 18 6 5.7161 -0.8024 0.5159 19 6 4.4336 -0.2808 0.5229 20 7 4.1914 0.9874 -0.0189 21 6 3.3789 -1.0194 1.0720 22 1 -0.3633 0.3704 0.9586 23 1 -0.3634 0.6449 -0.8001 24 1 -0.3634 -1.0154 -0.1584 25 1 1.6694 -0.5806 -4.4222 26 1 0.4268 -1.7791 2.0953 27 1 0.9386 -2.3777 0.4841 28 1 2.2147 -3.8869 1.7819 29 1 2.2680 -2.7744 3.1886 30 1 5.1122 -3.7672 2.0055 31 1 6.9619 -2.4587 1.0442 32 1 6.5280 -0.2297 0.0924 33 1 4.8017 1.3591 -0.6749 34 1 3.4133 1.4941 0.2617 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168381379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = 50.695117 kcal Electronic energy + Delta-G solvation = -16973.364149 eV Core-core repulsion = 14485.420205 eV Total energy + Delta-G solvation = -2487.943944 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06323 -36.36603 -34.51527 -32.71329 -31.22059 -28.93637 -28.19643 -26.66643 -25.07517 -22.21366 -21.32605 -20.63692 -19.16841 -17.16116 -15.84767 -15.68780 -15.50715 -14.93947 -14.33368 -13.98530 -13.58553 -12.93254 -12.79729 -12.35907 -12.24733 -12.05957 -11.65710 -11.26382 -11.04181 -10.90828 -10.67150 -10.47376 -10.38006 -10.14914 -9.97567 -9.49058 -9.39357 -8.83227 -8.33120 -7.25765 -6.24392 -6.17108 -4.06938 2.19411 2.40233 3.19191 3.28996 3.31360 4.35499 4.46178 4.76694 4.94590 5.16263 5.31112 5.45778 5.71129 5.90379 5.93742 5.99744 6.15526 6.30127 6.39579 6.40447 6.47352 6.54967 6.61861 6.71209 6.90854 7.04225 7.12470 7.17623 7.32992 7.53638 7.60042 7.92838 8.12236 8.40681 8.47496 8.62497 8.95422 9.50982 10.96031 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.011948 C = 0.010022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.330194 B = 2342.833779 C = 2793.203273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.171 3.829 3 H 0.037 0.963 4 C -0.531 4.531 5 H 0.077 0.923 6 C 0.086 3.914 7 N -0.883 5.883 8 Si 0.855 3.145 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.259 1.259 12 N -0.474 5.474 13 C 0.052 3.948 14 C -0.081 4.081 15 C -0.120 4.120 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.184 4.184 19 C 0.227 3.773 20 N -0.872 5.872 21 C 0.081 3.919 22 H 0.032 0.968 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.387 0.613 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 0.477 8.674 9.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.065 3.935 3 H 0.055 0.945 4 C -0.569 4.569 5 H 0.095 0.905 6 C -0.118 4.118 7 N -0.520 5.520 8 Si 0.682 3.318 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.183 1.183 12 N -0.189 5.189 13 C -0.075 4.075 14 C -0.118 4.118 15 C -0.124 4.124 16 C -0.163 4.163 17 C -0.135 4.135 18 C -0.207 4.207 19 C 0.121 3.879 20 N -0.414 5.414 21 C -0.020 4.020 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.214 0.786 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.507 0.806 8.908 9.289 hybrid contribution -0.191 0.881 -1.321 1.599 sum 2.317 1.686 7.587 8.110 Atomic orbital electron populations 1.22239 0.98074 1.01214 0.98902 1.19921 0.91746 0.94743 0.87076 0.94520 1.21336 1.36436 1.10005 0.89152 0.90545 1.24804 0.94201 0.96910 0.95853 1.70050 1.48176 1.34761 0.98977 0.87262 0.78395 0.87946 0.78149 1.20568 1.21621 1.18314 1.61203 1.00019 1.20903 1.36781 1.23075 0.95944 0.88284 1.00201 1.21237 0.91837 0.99085 0.99661 1.20235 0.94724 0.94770 1.02637 1.19956 0.91538 0.99838 1.04990 1.20478 0.97882 0.94514 1.00633 1.20282 0.94152 0.98198 1.08103 1.17062 0.91012 0.86415 0.93397 1.42466 1.32066 1.17303 1.49594 1.19018 0.89876 0.93089 1.00050 0.94900 0.93408 0.92799 0.92819 0.90651 0.91056 0.91206 0.90856 0.87641 0.87135 0.87025 0.78568 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.04 37.15 0.30 -2.80 16 2 C 0.17 3.89 1.52 -68.86 -0.10 3.78 16 3 H 0.04 0.84 3.95 -51.93 -0.21 0.64 16 4 C -0.53 -14.03 6.31 -34.44 -0.22 -14.25 16 5 H 0.08 2.32 7.14 -52.49 -0.37 1.95 16 6 C 0.09 2.35 5.31 -17.82 -0.09 2.26 16 7 N -0.88 -26.17 13.96 55.43 0.77 -25.40 16 8 Si 0.86 20.31 26.10 -169.99 -4.44 15.87 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -5.79 5.63 56.52 0.32 -5.47 16 12 N -0.47 -9.97 5.21 -162.59 -0.85 -10.82 16 13 C 0.05 0.97 5.38 -2.43 -0.01 0.96 16 14 C -0.08 -1.38 7.03 -26.62 -0.19 -1.56 16 15 C -0.12 -2.35 6.23 -104.06 -0.65 -3.00 16 16 C -0.14 -2.56 10.03 -39.62 -0.40 -2.96 16 17 C -0.12 -2.00 10.05 -39.56 -0.40 -2.40 16 18 C -0.18 -3.40 9.90 -39.48 -0.39 -3.79 16 19 C 0.23 4.64 6.04 -83.39 -0.50 4.14 16 20 N -0.87 -16.59 7.84 32.60 0.26 -16.34 16 21 C 0.08 1.73 4.38 -83.12 -0.36 1.37 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 1.03 5.48 -51.93 -0.28 0.74 16 24 H 0.05 1.13 6.73 -51.93 -0.35 0.78 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.50 6.45 -51.93 -0.33 1.17 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.39 6.67 8.90 -40.82 -0.36 6.31 16 34 H 0.39 7.54 6.20 -40.82 -0.25 7.29 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -29.56 263.07 -7.65 -37.21 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.34 Total: 13.75 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -3.02 Total: -18.24 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.18 Total: -52.55 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.44 Total: 15.87 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.56 -7.65 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168381379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.906 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds