Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47414 * 2 1 4 4 C 1.50702 * 109.47056 * 239.99658 * 2 1 3 5 5 H 1.08001 * 120.00368 * 245.14691 * 4 2 1 6 6 C 1.37877 * 119.99907 * 65.15183 * 4 2 1 7 7 N 1.31514 * 120.00054 * 201.01907 * 6 4 2 8 8 Si 1.86805 * 120.00126 * 21.01710 * 6 4 2 9 9 H 1.48499 * 109.47158 * 92.90487 * 8 6 4 10 10 H 1.48496 * 109.47251 * 212.91338 * 8 6 4 11 11 H 1.48509 * 109.46878 * 332.91184 * 8 6 4 12 12 N 1.46909 * 109.47218 * 119.99905 * 2 1 3 13 13 C 1.47925 * 110.99929 * 44.79797 * 12 2 1 14 14 C 1.54586 * 102.59995 * 149.07720 * 13 12 2 15 15 C 1.51580 * 102.89782 * 334.51348 * 14 13 12 16 16 C 1.38139 * 131.47475 * 196.11456 * 15 14 13 17 17 C 1.38238 * 120.21118 * 179.40817 * 16 15 14 18 18 C 1.38306 * 119.93943 * 359.96348 * 17 16 15 19 19 C 1.38454 * 120.17517 * 0.11249 * 18 17 16 20 20 N 1.40014 * 119.96630 * 180.02562 * 19 18 17 21 21 C 1.38690 * 108.00790 * 15.78741 * 15 14 13 22 22 H 1.09002 * 109.47144 * 291.12844 * 1 2 3 23 23 H 1.08998 * 109.47257 * 51.12783 * 1 2 3 24 24 H 1.09000 * 109.47496 * 171.13339 * 1 2 3 25 25 H 0.97004 * 120.00006 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.77931 * 267.35322 * 13 12 2 27 27 H 1.09001 * 110.78182 * 30.60798 * 13 12 2 28 28 H 1.08995 * 110.72857 * 216.15665 * 14 13 12 29 29 H 1.09000 * 110.72577 * 92.86655 * 14 13 12 30 30 H 1.07993 * 119.89635 * 359.37911 * 16 15 14 31 31 H 1.08008 * 120.03373 * 179.97438 * 17 16 15 32 32 H 1.08006 * 119.91776 * 180.13043 * 18 17 16 33 33 H 0.97003 * 119.99301 * 22.82083 * 20 19 18 34 34 H 0.96997 * 120.00190 * 202.81947 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5829 -1.6345 -1.1335 6 6 1.7890 -0.1808 -2.4799 7 7 1.8409 -0.9532 -3.5431 8 14 1.3855 1.6340 -2.6628 9 1 2.6337 2.3947 -2.9242 10 1 0.4453 1.8202 -3.7970 11 1 0.7566 2.1296 -1.4120 12 7 2.0197 -0.6925 1.1995 13 6 1.2725 -1.9484 1.4287 14 6 2.3302 -2.8518 2.1031 15 6 3.6383 -2.2760 1.5983 16 6 4.9208 -2.7893 1.5892 17 6 5.9601 -2.0548 1.0494 18 6 5.7161 -0.8024 0.5159 19 6 4.4336 -0.2808 0.5229 20 7 4.1914 0.9874 -0.0189 21 6 3.3789 -1.0194 1.0720 22 1 -0.3633 0.3704 0.9586 23 1 -0.3634 0.6449 -0.8001 24 1 -0.3634 -1.0154 -0.1584 25 1 1.6694 -0.5806 -4.4222 26 1 0.4268 -1.7791 2.0953 27 1 0.9386 -2.3777 0.4841 28 1 2.2147 -3.8869 1.7819 29 1 2.2680 -2.7744 3.1886 30 1 5.1122 -3.7672 2.0055 31 1 6.9619 -2.4587 1.0442 32 1 6.5280 -0.2297 0.0924 33 1 4.8017 1.3591 -0.6749 34 1 3.4133 1.4941 0.2617 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168381379.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = 30.202578 kcal Electronic energy + Delta-G solvation = -16974.252772 eV Core-core repulsion = 14485.420205 eV Total energy + Delta-G solvation = -2488.832567 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.56979 -37.89368 -36.08719 -34.53583 -32.97918 -30.46145 -29.68718 -28.17527 -27.03996 -23.74941 -22.90064 -22.10631 -20.81071 -19.09173 -17.51253 -17.17287 -16.99988 -16.53751 -16.10053 -15.50371 -15.04136 -14.78844 -14.41840 -14.14306 -13.79009 -13.54658 -13.24019 -12.91916 -12.76142 -12.50733 -12.22764 -12.04525 -11.86482 -11.84553 -11.68749 -11.45561 -10.86746 -10.69546 -10.19674 -8.74697 -8.28669 -7.78293 -6.20344 0.72702 0.94313 1.30890 1.35695 1.42855 2.35445 2.97929 3.06728 3.29961 3.49139 3.89324 4.01168 4.33612 4.47560 4.51974 4.58405 4.64249 4.78098 4.79888 4.84148 4.93342 5.03769 5.16783 5.26039 5.33495 5.43441 5.51333 5.61513 5.71388 5.89202 6.14931 6.24738 6.40175 6.49441 6.80849 6.96660 7.18766 7.40321 8.88624 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.011948 C = 0.010022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.330194 B = 2342.833779 C = 2793.203273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.173 3.827 3 H 0.041 0.959 4 C -0.508 4.508 5 H 0.027 0.973 6 C 0.031 3.969 7 N -0.938 5.938 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.297 1.297 11 H -0.234 1.234 12 N -0.472 5.472 13 C 0.049 3.951 14 C -0.074 4.074 15 C -0.135 4.135 16 C -0.152 4.152 17 C -0.112 4.112 18 C -0.195 4.195 19 C 0.202 3.798 20 N -0.872 5.872 21 C 0.040 3.960 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.261 0.739 26 H 0.102 0.898 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.393 0.607 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 1.075 10.367 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.066 3.934 3 H 0.059 0.941 4 C -0.546 4.546 5 H 0.045 0.955 6 C -0.167 4.167 7 N -0.578 5.578 8 Si 0.740 3.260 9 H -0.197 1.197 10 H -0.224 1.224 11 H -0.157 1.157 12 N -0.188 5.188 13 C -0.078 4.078 14 C -0.112 4.112 15 C -0.138 4.138 16 C -0.172 4.172 17 C -0.132 4.132 18 C -0.219 4.219 19 C 0.097 3.903 20 N -0.415 5.415 21 C -0.061 4.061 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.221 0.779 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.802 1.408 10.635 11.088 hybrid contribution -0.176 0.559 -1.796 1.889 sum 2.627 1.967 8.840 9.429 Atomic orbital electron populations 1.22152 0.96704 1.00942 1.00279 1.19828 0.92657 0.94641 0.86259 0.94118 1.21317 1.34598 1.07932 0.90764 0.95522 1.25539 0.94687 1.01046 0.95442 1.70190 1.51156 1.36854 0.99573 0.86291 0.78413 0.82524 0.78731 1.19745 1.22418 1.15656 1.61297 1.00331 1.21769 1.35394 1.23150 0.97222 0.87973 0.99409 1.21282 0.89851 0.99079 1.00946 1.20725 0.96328 0.94478 1.02290 1.20367 0.91061 1.01056 1.04734 1.20949 0.99449 0.93850 0.98917 1.20660 0.94106 0.99023 1.08091 1.17436 0.91835 0.86989 0.94023 1.42421 1.32175 1.17037 1.49836 1.19352 0.90104 0.94470 1.02153 0.92048 0.93892 0.93499 0.93033 0.88015 0.94263 0.90039 0.88227 0.84885 0.83787 0.85108 0.77857 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 8.04 71.98 0.58 -5.24 16 2 C 0.17 7.72 1.52 44.17 0.07 7.79 16 3 H 0.04 1.81 3.95 -2.39 -0.01 1.80 16 4 C -0.51 -27.26 6.31 25.60 0.16 -27.10 16 5 H 0.03 1.68 7.14 -2.91 -0.02 1.66 16 6 C 0.03 1.74 5.31 84.65 0.45 2.19 16 7 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 8 Si 0.92 41.83 26.10 68.60 1.79 43.62 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.23 -9.63 5.63 99.48 0.56 -9.07 16 12 N -0.47 -19.46 5.21 -668.30 -3.48 -22.94 16 13 C 0.05 1.79 5.38 86.65 0.47 2.26 16 14 C -0.07 -2.40 7.03 30.67 0.22 -2.19 16 15 C -0.13 -5.12 6.23 -19.50 -0.12 -5.24 16 16 C -0.15 -5.13 10.03 22.25 0.22 -4.91 16 17 C -0.11 -3.65 10.05 22.29 0.22 -3.42 16 18 C -0.20 -6.98 9.90 22.34 0.22 -6.76 16 19 C 0.20 8.20 6.04 38.31 0.23 8.43 16 20 N -0.87 -32.69 7.84 -50.78 -0.40 -33.09 16 21 C 0.04 1.70 4.38 38.30 0.17 1.86 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.04 1.76 5.48 -2.39 -0.01 1.75 16 24 H 0.05 1.94 6.73 -2.39 -0.02 1.93 16 25 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.04 1.67 6.45 -2.39 -0.02 1.66 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.39 13.32 8.90 -92.71 -0.83 12.49 16 34 H 0.39 14.68 6.20 -92.71 -0.57 14.11 16 Total: -1.00 -64.74 263.07 0.68 -64.06 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.42 Total: 37.69 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 2.88 Total: -32.32 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.58 Total: -113.06 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.79 Total: 43.62 kcal Total: -64.74 0.68 -64.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168381379.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.264 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds